Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29n22
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0110 + 18225431-18226992,18227158-18228132,18228343-182284... 33 0.16
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 33 0.21
08_01_1025 + 10361064-10361237,10361807-10361877,10362001-103622... 30 1.5
05_03_0326 - 12444830-12445074,12445218-12445425 30 2.0
01_06_1608 - 38612754-38616947,38617030-38617095 29 2.6
05_04_0233 + 19265553-19265703,19265805-19265826,19266788-192669... 29 4.5
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628 29 4.5
06_03_0219 - 18227559-18227858,18227864-18228340 28 6.0
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22... 28 6.0
01_01_1059 - 8356328-8356645,8357567-8357865,8358119-8358124,835... 28 6.0
01_01_0501 - 3682100-3682148,3682263-3682341,3682434-3682511,368... 28 6.0
11_01_0047 + 358370-360107,360713-361353 28 7.9
08_01_0070 + 490655-493165 28 7.9
03_06_0555 - 34693067-34693196,34693450-34693688,34693956-346940... 28 7.9
>01_05_0110 +
18225431-18226992,18227158-18228132,18228343-18228437,
18228556-18228842
Length = 972
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 349 VVHPSTGADGFM*HRLGAYDSGIFGCL*HGLTMGGFPQQQDRHGQ 215
++H + GF H+LG + I C G+T G P +Q RHG+
Sbjct: 35 LLHWKSTLKGFSQHQLGTWRHDIHPCNWTGITCGDVPWRQRRHGR 79
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 33.1 bits (72), Expect = 0.21
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +3
Query: 126 IMPECLPCPAAGIKSGLRDGKPIDGDMRPNCPCRSCCCGKP-PIVKPCY-KQPKIPESYA 299
+ P LP P K + P D +P PC C C KP P KPC+ ++PK
Sbjct: 77 VWPPPLPQPPPPCKPPPCEKPP--EDCKPK-PCHCCSCEKPKPKPKPCHCEKPKPCHCEK 133
Query: 300 PRRCYIKPSAPVE 338
P+ C P E
Sbjct: 134 PKPCEKPPPCKPE 146
>08_01_1025 +
10361064-10361237,10361807-10361877,10362001-10362235,
10362317-10362520
Length = 227
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 455 YRSKVVIPTEPGVRDAVDPALPPRHVGPG-SHAEHHHTTTRLRAQAE 592
Y+S P++ V +PALPP PG SH E +HT + + ++
Sbjct: 88 YKSMSENPSQTFVYRVKNPALPPTLRQPGWSHGEEYHTVRAIGSSSK 134
>05_03_0326 - 12444830-12445074,12445218-12445425
Length = 150
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 499 RSRSGPATTT-CGARVPCRTSPHNDTTTCPSRVYYERALSQHRN 627
++R G AT+ C ARV CR++P + PS VY R ++HR+
Sbjct: 105 KTRLGVATSRPCVARVQCRSAPLPPRSLFPS-VYLGRLGNRHRD 147
>01_06_1608 - 38612754-38616947,38617030-38617095
Length = 1419
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 442 GSQLGTMLGEGFFTSPRRFLHPSTGRYD 359
GS +G+ LG G S RF+H +GR++
Sbjct: 1259 GSDVGSSLGSGGDMSQPRFIHNESGRFE 1286
>05_04_0233 +
19265553-19265703,19265805-19265826,19266788-19266914,
19267814-19267904,19268008-19268097,19268194-19268294,
19268945-19269081,19271315-19271511,19271600-19271621,
19272343-19272466,19273158-19273248,19273378-19273467,
19273562-19273662,19278576-19278716
Length = 494
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 234 CCGKPPIVKPCYKQPKIPESYAPRRCYIKPSA 329
CC PP + P + K+ ES+ + Y+ +A
Sbjct: 6 CCANPPTLNPAGGEGKVVESFGGIKAYVAGAA 37
>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
Length = 132
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 476 PTEPGVRDA-VDPALPPRHVGPGSH 547
P++P +R DP P RH GP SH
Sbjct: 22 PSQPALRSLNQDPPKPARHTGPRSH 46
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/81 (28%), Positives = 31/81 (38%)
Frame = +3
Query: 129 MPECLPCPAAGIKSGLRDGKPIDGDMRPNCPCRSCCCGKPPIVKPCYKQPKIPESYAPRR 308
+P C P PAA S +R RP P PP + + P+ P PRR
Sbjct: 71 LPRCRPPPAACAASTVR---------RPAAPSPPPASPPPPPPRLALRFPRRPPELPPRR 121
Query: 309 CYIKPSAPVEGCTTYKLSYLP 371
+ SAP +L+ P
Sbjct: 122 RPSRFSAPAASSRLSRLARAP 142
>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
225296-225356,225666-226918
Length = 1891
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 442 GSQLGTMLGEGFFTSPRRFLHPSTGRYD 359
GS +G LG G S RF+H +GR++
Sbjct: 1255 GSDVGGSLGSGGDMSQPRFIHNESGRFE 1282
>01_01_1059 -
8356328-8356645,8357567-8357865,8358119-8358124,
8358276-8358720,8359722-8360036
Length = 460
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = +3
Query: 465 KLSYLPNPVCVTQSIRPCHHD-MWGQGPMQNITTQRHDYVPKPSILRESFKPAPKF 629
K L +PV T IRP H D W P +Q Y + + S PKF
Sbjct: 192 KRDRLRSPVRTTSDIRPRHTDSRWSHSPRSAPRSQSKGYYNERPLDGRSHDDMPKF 247
>01_01_0501 -
3682100-3682148,3682263-3682341,3682434-3682511,
3682770-3682866,3682944-3683029,3683310-3683381,
3683451-3683520,3683988-3684110,3684212-3684370,
3684443-3684730,3685652-3685725,3686107-3686344
Length = 470
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 261 PCYKQPKIPESYAPRRCYIKPSAPVEGCTTYKLSYLPVDGCKNLR 395
P +QP++ +YA RR SA + G T+ + + +GC+ +R
Sbjct: 43 PRKQQPQV--AYALRRASATSSAHLHGATSRSFTGVATEGCEQIR 85
>11_01_0047 + 358370-360107,360713-361353
Length = 792
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +1
Query: 529 CG--ARVPCRTSPHNDTTTCPSRVYYERALSQHRNFT 633
CG A VPC TSP + S A +HR FT
Sbjct: 360 CGYSASVPCPTSPSPSPSAPASPAQSREATGRHRKFT 396
>08_01_0070 + 490655-493165
Length = 836
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +3
Query: 381 CKNLRGEVKKPSPNIVPSCEPMEGC---TVQKLSYLPN 485
C++L G V P+P P P+ GC TV++LS L N
Sbjct: 442 CRDLEGAVIMPAPEASPPPPPL-GCEEFTVKELSRLTN 478
>03_06_0555 -
34693067-34693196,34693450-34693688,34693956-34694033,
34694057-34694131,34694667-34694831,34695101-34695151,
34695250-34695300,34695462-34695533,34695736-34695948,
34696064-34696214,34696376-34696490,34696665-34696748,
34696841-34696964,34697064-34697145,34697238-34697299,
34697787-34697840,34697944-34698147
Length = 649
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/73 (24%), Positives = 30/73 (41%)
Frame = +2
Query: 164 QVGSSRRKAH*RRHETELPMPILLLWETAHC*AVLQATKNPRVVRAETMLHKTISPRRGM 343
++ SR+K R + E + +L WE C V ++ V A + S G
Sbjct: 69 EMAESRKKKRKRNYSLEKELTVL--WEKMRCHNVSSTERSKLVSEALRKMDGKYSEIAGS 126
Query: 344 HDLQAVVSTCRRM 382
H V+ TC ++
Sbjct: 127 HVTARVLQTCVKL 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,403,065
Number of Sequences: 37544
Number of extensions: 550306
Number of successful extensions: 1597
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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