Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n20
         (327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    26   1.7  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    24   5.1  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    24   5.1  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    24   6.7  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    23   8.8  

>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 187 FHVVKGKPHHAIQQLTGEGHVFDAHMHAYYLLSNF 83
           F+++   P H +  + G GH+ D ++H    +  F
Sbjct: 424 FNLLDDTPEHPVIDVVGFGHMGDGNLHLNIAVRQF 458


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 91  TINSMRACVRQIHGLRLLIVESHD 162
           T+   RAC ++I  +R+ +++ HD
Sbjct: 213 TLLHARACYQKIGDIRMYLIDPHD 236


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
 Frame = -3

Query: 193 KRFHVVKGKPHHAIQQLTGE------GHVFDAHMHAYY 98
           K + VVKG P   +QQ T          V D H HA Y
Sbjct: 685 KYYFVVKGMPERVLQQSTSVITNGSLDEVEDMHSHADY 722


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 179 YVKTFPKTS*FFF 217
           ++KT PKTS FFF
Sbjct: 30  FLKTLPKTSIFFF 42


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 320 FQRAKFSFDSYQNHISA-SINFHQKRSYL 237
           F+  + +F++ +N I+    NFH KR YL
Sbjct: 135 FRVREITFETLENVITDFKPNFHDKRQYL 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,131,909
Number of Sequences: 5004
Number of extensions: 18612
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)