Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n19
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...   238   5e-64
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    29   0.81 
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    28   1.1  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    26   4.3  
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    25   7.6  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    25   10.0 

>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score =  238 bits (583), Expect = 5e-64
 Identities = 112/199 (56%), Positives = 144/199 (72%), Gaps = 1/199 (0%)
 Frame = +3

Query: 81  TLKNLSASLMRTTERIKLVVPHRNACVTVQHHCHDCLIIGAGGAGLRTAVGLAQQQFSVA 260
           TLK +++S      R K V    +    V  H +D +++GAGGAGLR   GLA+  F+ A
Sbjct: 25  TLKKIASS---QPLRAKQVSTSESVKYPVIDHTYDAIVVGAGGAGLRATFGLAEAGFNTA 81

Query: 261 VVSKLYPTRSHTIAAQGGMNAAIGSMHPDDWRWHFYDTVKGSDWLGDQDSIHYLTREAPN 440
            ++KL+PTRSHT+AAQGG+NAA+G+M  DDWRWHFYDTVKGSDWLGDQD+IHY+T+EAP 
Sbjct: 82  CITKLFPTRSHTVAAQGGINAALGNMTKDDWRWHFYDTVKGSDWLGDQDAIHYMTKEAPK 141

Query: 441 VAIELENMGMPFSRTKDGKIYQRPFGGSTTHNGK-EVAKRTCCVADRTGHALLHTLYGYS 617
             +ELE+ G+PFSRTK+GKIYQR FGG +   GK   A R   VADRTGH++LHTLYG S
Sbjct: 142 AVLELEHFGVPFSRTKEGKIYQRAFGGQSLEYGKGGQAYRCAAVADRTGHSILHTLYGQS 201

Query: 618 TKLKNIDHFAEFFVLXLLI 674
            K  N + F E+F + L++
Sbjct: 202 LK-HNTNFFIEYFAMDLIM 219


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -2

Query: 392 PIRAFDSIIEVPAPIIRVHTTNSSIHSALRCDSVGPRWVQL--GHYSY 255
           P+   D +  +P  I++    N  IHS L C  V P W ++   H SY
Sbjct: 232 PLLKKDILSNLPFSIVQSILLNLDIHSFLSCRLVSPTWNRILDVHTSY 279


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
 Frame = +3

Query: 183 DCLIIGAGGAGLRTAVGLAQQ------QFSVAVVSKLYPTRSHTIAAQGGMNAAIGSMHP 344
           D  I+GAG AGL  A+ + QQ         V V+ K     +H+++       A+  + P
Sbjct: 92  DVCIVGAGPAGLSAAIRIKQQAAKANRDIRVVVLEKAAEPGNHSVSGAVIQPTALDELLP 151

Query: 345 DDWR 356
            +WR
Sbjct: 152 -NWR 154


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 265 CPSCTQRGPTLSQRRAE*MLLLVVCT 342
           CP  TQ  P +S  +    LLL+VCT
Sbjct: 344 CPLITQLFPLISSPKEMAWLLLIVCT 369


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 183 DCLIIGAGGAGLRTA--VGLAQQQFSVAVV 266
           D +I+GAG AGL  A  +G  +    +A++
Sbjct: 78  DIVIVGAGSAGLTAAYYIGTRRPDLKIAII 107


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = +3

Query: 363 FYDTVKGSDWLGDQDSIHYLTREAPNVAIELENMGMPFSRTKDGKIYQRPFGGS 524
           F   + GS+ +G   ++     EA  +   L  +GM  +   D K+   P+  S
Sbjct: 227 FLVDLAGSESVGKSGAVGQTLEEAKKINRSLSTLGMVINSLTDSKLSHVPYRDS 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,743
Number of Sequences: 5004
Number of extensions: 54792
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)