Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n19
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D30651-1|BAA21637.1|  646|Caenorhabditis elegans flavoprotein su...   253   1e-67
U41555-9|AAB37034.1|  646|Caenorhabditis elegans Hypothetical pr...   251   3e-67
AF043693-6|AAB97539.1|  640|Caenorhabditis elegans Hypothetical ...   246   1e-65
Z82081-1|CAB04961.2|  396|Caenorhabditis elegans Hypothetical pr...    31   0.57 
U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical pr...    29   2.3  

>D30651-1|BAA21637.1|  646|Caenorhabditis elegans flavoprotein
           subunit of complex II protein.
          Length = 646

 Score =  253 bits (619), Expect = 1e-67
 Identities = 112/171 (65%), Positives = 139/171 (81%), Gaps = 1/171 (0%)
 Frame = +3

Query: 165 VQHHCHDCLIIGAGGAGLRTAVGLAQQQFSVAVVSKLYPTRSHTIAAQGGMNAAIGSMHP 344
           V  H +D +++GAGGAGLR A+GLA++    AV++KL+PTRSHT+AAQGG+NAA+G+M+P
Sbjct: 38  VVDHAYDAVVVGAGGAGLRAAMGLAEEGLKTAVITKLFPTRSHTVAAQGGINAALGNMNP 97

Query: 345 DDWRWHFYDTVKGSDWLGDQDSIHYLTREAPNVAIELENMGMPFSRTKDGKIYQRPFGGS 524
           D+WRWHFYDTVKGSDWLGDQD+IHY+TREA    IELEN GMPFSRT DGKIYQR FGG 
Sbjct: 98  DNWRWHFYDTVKGSDWLGDQDAIHYMTREAERAVIELENYGMPFSRTTDGKIYQRAFGGQ 157

Query: 525 TTHNGK-EVAKRTCCVADRTGHALLHTLYGYSTKLKNIDHFAEFFVLXLLI 674
           +   G+   A RTCCVADRTGH+LLHTLYG S +  N ++F E+F L L++
Sbjct: 158 SNDFGRGGQAHRTCCVADRTGHSLLHTLYGASLQY-NCNYFVEYFALDLIM 207


>U41555-9|AAB37034.1|  646|Caenorhabditis elegans Hypothetical
           protein C03G5.1 protein.
          Length = 646

 Score =  251 bits (615), Expect = 3e-67
 Identities = 112/171 (65%), Positives = 138/171 (80%), Gaps = 1/171 (0%)
 Frame = +3

Query: 165 VQHHCHDCLIIGAGGAGLRTAVGLAQQQFSVAVVSKLYPTRSHTIAAQGGMNAAIGSMHP 344
           V  H +D +++GAGGAGLR A+GLA+     AV++KL+PTRSHT+AAQGG+NAA+G+M+P
Sbjct: 38  VVDHAYDAVVVGAGGAGLRAAMGLAEGGLKTAVITKLFPTRSHTVAAQGGINAALGNMNP 97

Query: 345 DDWRWHFYDTVKGSDWLGDQDSIHYLTREAPNVAIELENMGMPFSRTKDGKIYQRPFGGS 524
           D+WRWHFYDTVKGSDWLGDQD+IHY+TREA    IELEN GMPFSRT DGKIYQR FGG 
Sbjct: 98  DNWRWHFYDTVKGSDWLGDQDAIHYMTREAERAVIELENYGMPFSRTTDGKIYQRAFGGQ 157

Query: 525 TTHNGK-EVAKRTCCVADRTGHALLHTLYGYSTKLKNIDHFAEFFVLXLLI 674
           +   G+   A RTCCVADRTGH+LLHTLYG S +  N ++F E+F L L++
Sbjct: 158 SNDFGRGGQAHRTCCVADRTGHSLLHTLYGASLQY-NCNYFVEYFALDLIM 207


>AF043693-6|AAB97539.1|  640|Caenorhabditis elegans Hypothetical
           protein C34B2.7 protein.
          Length = 640

 Score =  246 bits (602), Expect = 1e-65
 Identities = 110/171 (64%), Positives = 137/171 (80%), Gaps = 1/171 (0%)
 Frame = +3

Query: 165 VQHHCHDCLIIGAGGAGLRTAVGLAQQQFSVAVVSKLYPTRSHTIAAQGGMNAAIGSMHP 344
           V  H  D +++GAGGAGLR A+GL++     AV++KL+PTRSHT+AAQGG+NAA+G+M+P
Sbjct: 31  VVDHTFDAVVVGAGGAGLRAAMGLSEGGMKTAVITKLFPTRSHTVAAQGGVNAALGNMNP 90

Query: 345 DDWRWHFYDTVKGSDWLGDQDSIHYLTREAPNVAIELENMGMPFSRTKDGKIYQRPFGGS 524
           D+WRWHFYDTVKGSDWLGDQD+IHY+TREA    IELEN GMPFSRT DGKIYQR FGG 
Sbjct: 91  DNWRWHFYDTVKGSDWLGDQDAIHYMTREAERAIIELENYGMPFSRTTDGKIYQRAFGGQ 150

Query: 525 TTHNGK-EVAKRTCCVADRTGHALLHTLYGYSTKLKNIDHFAEFFVLXLLI 674
           +   G+   A RTCCVADRTGH+LLHTLYG S +  + ++F E+F L L++
Sbjct: 151 SNDFGRGGQAHRTCCVADRTGHSLLHTLYGASLQY-DCNYFVEYFALDLIM 200


>Z82081-1|CAB04961.2|  396|Caenorhabditis elegans Hypothetical
           protein W09H1.1a protein.
          Length = 396

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = +2

Query: 80  DTEEPVSLLNEND*KDQTSCSSSKRLRHGPAPLPRLPHHRSGGSRLANRRWSGATTILGS 259
           D+++  SL+N+N+  ++  C ++  +   P P P L   RS          S  T +   
Sbjct: 31  DSKQIHSLINKNNTFNRILCKNADTVADSPTPTPSLTASRSSSVISIASTVSTETVVSSG 90

Query: 260 CSVQAVPNEVPHYRSAGR 313
             ++  P +V   +SA R
Sbjct: 91  RLIKVAPAKVRQSKSASR 108


>U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical
           protein ZC155.3 protein.
          Length = 845

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 383 LGLARRSGLNPLSHA*STKRGYRIGKYG 466
           LG+AR   L+ ++   S K  Y+IG+YG
Sbjct: 72  LGMAREEALHAITFGHSAKCSYKIGRYG 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,218,987
Number of Sequences: 27780
Number of extensions: 325965
Number of successful extensions: 857
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)