Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n18
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    30   0.21 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    29   0.49 
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    27   1.5  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    27   1.5  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    27   1.5  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    27   1.5  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    27   2.0  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   3.5  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   3.5  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   8.0  

>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
 Frame = +3

Query: 81  NNKREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIPTS--KPSSKQTS 254
           NN  E +  +   +  S+QST A +  T YD   G    T     + P     PSS+  +
Sbjct: 86  NNGAEAAAAAARRIAESLQSTKATSSRTSYDHSEGITSTTSASPPSAPAPPLPPSSEGPA 145

Query: 255 LQVVTKLSQNTDLILTQPMITADTEKYSDIQGSLQVPTAQAISTSRHSS 401
           + +   ++  T  ++    +     + ++++    +  A  +S   + S
Sbjct: 146 VDIPPSMADITSKVIEGDGVFMQDVEINNVRNRYILVRASTLSEIENKS 194


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
 Frame = +3

Query: 45  SKSIMDTTP-STENNKREQSTVSQN-LVLNSIQSTAADNDETFYDQDSGRLV-GTPTLLK 215
           S S   +TP S  ++    S  SQ+   ++S  ST A +  T     S  +    P+L  
Sbjct: 270 SSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATS--TLQPTTSSPITTSAPSLSS 327

Query: 216 TIPTSKPSSKQTSLQV--VTKLSQNTDLILT 302
            +PT+ PSS  T ++V   TK   +T  I+T
Sbjct: 328 ALPTTYPSSLSTEVEVEYFTKTITDTSSIVT 358


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 219 IPTSKPSSKQTSLQVVTKLSQNTDLILTQPMITADTEK 332
           + TS PS+  ++ + +  LS + DL ++QP+ TA   +
Sbjct: 209 VQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHR 246


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
 Frame = +3

Query: 63  TTPSTENNKREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIPTSKPSS 242
           T   TE     Q  +S ++   S+ STA     +  +     +      L + PTS  S 
Sbjct: 150 TDEDTEEVASIQPALSTSVSSLSLASTAMSKSASASEFSGSSVTKASKKLTSSPTSVASK 209

Query: 243 KQTSLQVVTKLSQNTDLILTQPMITAD----TEKYSDIQGSLQ 359
           K T L  V+K++  + L +T    + D      K  D + S+Q
Sbjct: 210 KAT-LSSVSKVASTSSLPVTSVSASVDPKSAASKVQDAEFSIQ 251


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 39  KFSKSIMDTTPSTENNKREQS---TVSQNLVLNSIQSTAADNDETF 167
           K SKSI+ TTPS + N R  S   T +  L  +   ++  D DE F
Sbjct: 393 KVSKSILKTTPSKKANARSVSFTQTTTDTLSESEKFASNVDLDENF 438


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 297 LTQPMITADTEKYSDIQGSLQVPTAQAISTSRHSSKQPS 413
           L  P++ ++ E  S  + SL++P    +STS   SK+ S
Sbjct: 123 LQNPVVDSNNEYESKFRLSLEIPPTDFLSTSTELSKRES 161


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 75  TENNKREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIP 224
           T+N +RE + VS+     ++ S+++ +D    + DSG     P  +K  P
Sbjct: 84  TQNVERENNIVSEAKKQKTLGSSSSSSDAVSSNNDSGASTPIPLPIKEPP 133


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 117  LVLNSIQSTAADNDETFYDQDSGRLVGTPTLL 212
            LV+N++ + A +  +T   QD G  V  PT++
Sbjct: 1172 LVINNVTTAAQNGRDTMAVQDLGVYVAAPTIM 1203


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +3

Query: 63  TTPSTENNKREQSTVSQNLVLNSIQ-STAADNDETFYDQD--SGRLVGTPTLLKTIPTSK 233
           ++P + + K E + V    VL+    +T+A    +F      S +  GTP + K+ P+S 
Sbjct: 158 SSPGSNDIKSEFAAVKNEYVLSPTSPTTSAAFPSSFSSLPLVSSKPTGTPFVPKSPPSSS 217

Query: 234 PSSKQTS 254
           PS+   S
Sbjct: 218 PSTTNVS 224


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 97  CSRLLFSVDGVVSIIDLENFNYKLF 23
           CS L   +D  +S++  +N N+KLF
Sbjct: 538 CSILPSYIDLFISLMSFKNLNFKLF 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,931
Number of Sequences: 5004
Number of extensions: 44385
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)