Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n16
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    28   1.4  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    28   1.4  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   4.4  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    26   4.4  

>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 372 KQWKTSNGQVKTLSDLPLIEGFTDKTAKKLCDS--ILNGPTEEVEQISNKIKGQILHPN 542
           K WKTSNG +    D+   E F  K +    +S    +    +++Q+SN +  + L  N
Sbjct: 90  KIWKTSNGDLNVAVDMYFDESFNIKNSNPDSESQKDTDASLTQMDQLSNTVSVKDLSIN 148


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 498 EQISNKIKGQILHPNLKESTIKDCKT--VLTVYISVNSVCWTLINKNDYEVVEWQYYG 665
           +++  ++ G ++H NL     K  K+  + +V +S +   W + N  D  +V W  YG
Sbjct: 317 KKLRKRLNGDVVH-NLDVPHDKSYKSNYLFSVVLSPHQASWNIYNSFDNSMVLWCPYG 373


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 127  NVLMILPRVAVSKYVQPITTFLIHL 201
            N++   PR++V  +VQPIT  L+ +
Sbjct: 1214 NMVQSFPRLSVEAHVQPITRSLVRV 1238


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 411 SDLPLIEGFTDKTAKKLCDSILNGPTEEVEQISN-KIKGQILHPNLK 548
           S + LI+ +++K  KKL   +L  P+E   +I   ++  QI  P ++
Sbjct: 93  SSVKLIQEYSEKVHKKLQAKLLENPSETSPEIERLQVLSQINLPEVR 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,754
Number of Sequences: 5004
Number of extensions: 53144
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)