Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n16
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150...    28   6.0  
12_01_1088 + 11298966-11299086,11299104-11299189,11299298-112993...    28   7.9  
08_02_1237 + 25475219-25475916,25476127-25476320,25476407-254773...    28   7.9  
06_03_0328 + 19609096-19609657,19609862-19610169                       28   7.9  
04_03_0050 + 10161245-10161363,10161557-10161686,10161868-101624...    28   7.9  
03_02_0090 - 5564326-5567280                                           28   7.9  

>01_05_0564 +
           23312419-23312987,23314652-23314751,23314832-23315055,
           23315212-23316041,23316161-23316275,23316786-23316905,
           23317410-23317450,23317546-23317595,23317684-23317719,
           23317836-23317856
          Length = 701

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = +3

Query: 378 WKTSNGQVKTLSDLPLIEGFTDKTAKKLCDSILNGPTEEVEQISNKIKGQILHPNLK 548
           +  S+GQ  T S +P  E   +K A    + I+N   EEV+Q  NK + QIL   L+
Sbjct: 639 YSRSSGQ--TSSSVPSRESIANKGASPPRNDIVN---EEVDQRQNKPRRQILRDELQ 690


>12_01_1088 +
           11298966-11299086,11299104-11299189,11299298-11299379,
           11300817-11301202
          Length = 224

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +3

Query: 414 DLPLIEGFTDKTAKKLCDSILNG----PTEEVEQISNKIKGQILHPNLKESTIKDCKTV 578
           ++PL++     T  +    ILN     PT+EV +++ +    ILH   ++     C T+
Sbjct: 159 NMPLLDAMQVPTCARYLKDILNNKRPLPTKEVVKLTEQCSNAILHKLPEKKKYSRCPTI 217


>08_02_1237 +
           25475219-25475916,25476127-25476320,25476407-25477302,
           25477416-25477490,25477582-25477689,25477780-25477897,
           25478007-25478142,25478228-25478372,25478460-25479080,
           25479166-25479597
          Length = 1140

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = +3

Query: 489 EEVEQISNKIKGQILH-----PNLKESTIKDCKTVLTVYISVNSVCWTLINKNDYEVVEW 653
           +E   I   ++G+I++     PN  E  I+    VL++Y+S+ ++ W  + +N  + V  
Sbjct: 609 KEPSTIPGNLRGEIVNWLKHSPNEMEGYIRPGCLVLSMYLSMPAIAWDELEENLLQRVNT 668

Query: 654 QYYGID 671
              G D
Sbjct: 669 LVQGSD 674


>06_03_0328 + 19609096-19609657,19609862-19610169
          Length = 289

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = +3

Query: 384 TSNGQVKTLS-DLPLIEGFTDKTAKKLCDSILNG----PTEEVEQISNKIKGQILHPNLK 548
           T  G ++ +  ++PL++     T  +    ILN     PT EV +++ +   QILH   +
Sbjct: 184 TRRGVIQKIHINVPLLDAMQVPTYARYLKDILNNKRLLPTTEVVKLTEQCSNQILHKFPE 243

Query: 549 ESTIKDCKTV 578
           +     C T+
Sbjct: 244 KKKDPGCPTI 253


>04_03_0050 +
           10161245-10161363,10161557-10161686,10161868-10162456,
           10162661-10162995
          Length = 390

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = +3

Query: 384 TSNGQVKTLS-DLPLIEGFTDKTAKKLCDSILNG----PTEEVEQISNKIKGQILHPNLK 548
           T+ G ++ +  ++PL++     T  +    ILN     PT EV +++++    ILH   K
Sbjct: 276 TTRGVIQKIHINVPLLDAMQVPTYARYLKDILNNKRPLPTTEVVKLTDQCSNVILHKLPK 335

Query: 549 ESTIKDCKTV 578
           +     C T+
Sbjct: 336 KKKDPGCPTI 345


>03_02_0090 - 5564326-5567280
          Length = 984

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +3

Query: 399 VKTLSDLPLIEGFTDKTAKKLCDSILNGP---TEEVEQISNKIKGQILHPNLKESTIKDC 569
           V +++ L  + GFT+ + ++LC   + GP   T     +S+ + G  +   L+   I+ C
Sbjct: 727 VSSVAALRKLSGFTNVSTRRLCLKDMAGPASLTLLPSTLSDTLGGLDMLERLQHLAIRSC 786

Query: 570 KTVLTVYISVNS 605
             V  + I   S
Sbjct: 787 TGVKDIVIDAGS 798


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,015,614
Number of Sequences: 37544
Number of extensions: 260196
Number of successful extensions: 636
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)