Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n16
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016685-3|AAG24145.2|  422|Caenorhabditis elegans Hypothetical ...    32   0.33 
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    31   0.76 
Z81097-1|CAB03175.1|  491|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U96695-1|AAB57697.1|  491|Caenorhabditis elegans deoxyuridinetri...    29   3.0  
Z68342-3|CAA92773.1|  751|Caenorhabditis elegans Hypothetical pr...    29   4.0  

>AF016685-3|AAG24145.2|  422|Caenorhabditis elegans Hypothetical
           protein F59E11.11 protein.
          Length = 422

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 456 KLCDSILNGPTEEVEQISNKIKGQILHPNLKESTIKDCKTVLTVYISVNSVCWTLINK 629
           KL   +L G  EEV Q    +    LH + K+  +      LT  +S+N+   +L+NK
Sbjct: 337 KLTGKMLGGDVEEVTQKLQDVLANDLHEHYKDQEVSRYAHRLTKLLSINNDWQSLLNK 394


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 259 PTVQNILLLKVINKLYHCNQDVSKMWL*VARIY*PQHAVESSTHSNTCLY 110
           P+V N+L+ + +  +++ ++  S  WL VA +     A  SS   +TC Y
Sbjct: 777 PSVSNVLMFRKMEHIFYSSE--SNWWLLVALVMLTIFAYRSSMEQHTCYY 824


>Z81097-1|CAB03175.1|  491|Caenorhabditis elegans Hypothetical
           protein K07A1.2 protein.
          Length = 491

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 441 DKTAKKLCDSILNGPTEEVEQISNKIKGQILHPNLKESTIKDCKTVLTVYISVNSVCWTL 620
           D+ AK +C+ I NG  EEV+ + +  +G     +  EST+          +   +V +T 
Sbjct: 132 DRIAKLICEQIGNGTYEEVKSLPSTNRGAGGFGSTGESTMNSETANPATNLERITVRFTQ 191

Query: 621 INKN 632
           +N+N
Sbjct: 192 LNEN 195


>U96695-1|AAB57697.1|  491|Caenorhabditis elegans
           deoxyuridinetriphosphatase protein.
          Length = 491

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 441 DKTAKKLCDSILNGPTEEVEQISNKIKGQILHPNLKESTIKDCKTVLTVYISVNSVCWTL 620
           D+ AK +C+ I NG  EEV+ + +  +G     +  EST+          +   +V +T 
Sbjct: 132 DRIAKLICEQIGNGTYEEVKSLPSTNRGAGGFGSTGESTMNSETANPATNLERITVRFTQ 191

Query: 621 INKN 632
           +N+N
Sbjct: 192 LNEN 195


>Z68342-3|CAA92773.1|  751|Caenorhabditis elegans Hypothetical
           protein F38E11.4 protein.
          Length = 751

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 441 DKTAKKLCDSILNGPTEEVEQISNKIKGQILHPNLKESTIKDCKTVLTVYISVN-SVCWT 617
           DKT +  CD        ++  +  K++G +    +    +++ + V TV +    S+ WT
Sbjct: 600 DKTFQVSCDFSKIADKNQLAALKPKVEGDVKSEKVLMEIVRNGQAVTTVPLGAEVSLRWT 659

Query: 618 LINKND 635
           +I++ D
Sbjct: 660 VIDETD 665


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,523,605
Number of Sequences: 27780
Number of extensions: 288934
Number of successful extensions: 733
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)