Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29n14
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0023 + 31089351-31089822,31089921-31090795 31 1.0
04_04_0670 - 27128153-27129075,27129152-27129266,27129348-271295... 30 1.8
04_03_0859 + 20367738-20368391 30 1.8
06_01_0473 + 3359152-3359198,3359568-3359768,3360502-3360646,336... 29 3.2
09_06_0078 + 20727684-20728036,20728871-20728895,20729218-207293... 29 4.2
08_02_0459 + 17420156-17420976,17422291-17424199 28 5.6
12_02_0778 + 23074463-23076411,23076859-23077072,23077824-230778... 28 7.4
03_05_0549 - 25444234-25446792 28 7.4
05_06_0193 + 26279105-26279229,26279725-26279833,26280362-262804... 27 9.7
>03_06_0023 + 31089351-31089822,31089921-31090795
Length = 448
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +1
Query: 349 KLKESGIFDWQDASLNDRERKELSKLFDAVEI----MTTSRNRQPPNVQNMFSTLRLV 510
KL E GI D + ++ E +L DA EI + +++ R+ N+QN+F T RL+
Sbjct: 147 KLIEDGILD-ETGNVKKHEMVQLMPPIDAAEIPWVSLGSTQERRRYNIQNVFKTNRLM 203
>04_04_0670 -
27128153-27129075,27129152-27129266,27129348-27129537,
27129652-27129786,27129874-27129971,27131075-27131764
Length = 716
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 217 LLFAGVLSYGTQCPMHEMTDAKAAYKSGEIPDSSMPITLDNIKA 348
LL +LS+G P+ ++D K + S +IP+SSM +L KA
Sbjct: 332 LLLGAILSWGVMWPL--ISDLKGDWYSADIPESSMK-SLQGYKA 372
>04_03_0859 + 20367738-20368391
Length = 217
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +1
Query: 469 PPNVQNMFSTLRLVERVVKKQLKEGQISESLAGKFQWEKLSTRQRRE 609
P + ST E+V KK+LKE + + L G+ E+L R RRE
Sbjct: 87 PKHAAEGSSTASEEEQVAKKELKEAEEDDGLQGESARERLK-RHRRE 132
>06_01_0473 +
3359152-3359198,3359568-3359768,3360502-3360646,
3361141-3361407,3361608-3362150
Length = 400
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -2
Query: 566 PAKDSDICPSLSCFLTTLSTRRRVENMFCTFGGCRLRDV 450
P K S+ SLSC TT S+ +R F G RLRD+
Sbjct: 15 PVKSSE-STSLSCSTTTTSSFQRFLLFFFVSGAARLRDL 52
>09_06_0078 +
20727684-20728036,20728871-20728895,20729218-20729347,
20729441-20729571,20729654-20729742,20730127-20730203,
20730279-20730412
Length = 312
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -3
Query: 253 IACRKKERPRTVKSI 209
IACR+++RPRTVK I
Sbjct: 157 IACRQEDRPRTVKEI 171
>08_02_0459 + 17420156-17420976,17422291-17424199
Length = 909
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 191 RTLIS-CYGFYCSRAFFLTARNALCT 265
R LIS C+GF C R F+LT + + T
Sbjct: 812 RLLISGCHGFSCLRQFYLTGQQPIFT 837
>12_02_0778 +
23074463-23076411,23076859-23077072,23077824-23077887,
23077930-23078008,23078181-23078303,23078805-23078919
Length = 847
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +3
Query: 48 YGRYNKSVDNYFHGA*RSVWLNTYVQSVV---LLSLREI 155
+G+ K+ F G R VW NT+ Q++V LL++R I
Sbjct: 719 FGQRRKAQQVVFEGINRRVWENTWAQAMVHAWLLNVRSI 757
>03_05_0549 - 25444234-25446792
Length = 852
Score = 27.9 bits (59), Expect = 7.4
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +1
Query: 412 ELSKLFDAVEIMTTSRNR--QPPNVQNMFSTLRLVERVVKKQLKEGQISESLAGKFQWEK 585
E L V+IM SR Q V + LR VE + + + ++ +L ++
Sbjct: 765 EADGLRPVVDIMVESRTEALQRRAVWAVERILR-VEEIAGEVAADQTVASALVEAYRNGD 823
Query: 586 LSTRQRRERPLYHLDKFAN 642
TRQ ER L HLD+ N
Sbjct: 824 PRTRQTAERALRHLDRIPN 842
>05_06_0193 +
26279105-26279229,26279725-26279833,26280362-26280437,
26280527-26281472,26281564-26281615,26281945-26282067,
26282144-26282219,26282308-26282492,26282615-26282806,
26282895-26282963,26283745-26283954,26285602-26285751,
26286283-26286344,26286428-26286503,26286575-26286745
Length = 873
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -2
Query: 590 DSFSHWNFPAKDSDICPSL--SCFLTTLSTRR 501
DS SHW + A D I PS+ C LT + R
Sbjct: 745 DSLSHWIYAASDMFIVPSMFEPCGLTQMIAMR 776
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,115,862
Number of Sequences: 37544
Number of extensions: 301150
Number of successful extensions: 866
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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