Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n10
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    25   4.4  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    24   5.9  
SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    24   5.9  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    24   7.8  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    24   7.8  

>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 196 SKMDELSKGMTQTGSAATTDKIQENDGSSNPVVY 297
           +K  E S   T TG+AATT      + ++NP  +
Sbjct: 239 AKEKETSSNQTATGTAATTTNQFSFNTAANPFAF 272


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 172 HXHTTP*QNFKHNHNL 125
           H HTTP    KH +NL
Sbjct: 425 HSHTTPRSTSKHENNL 440



 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -1

Query: 304 HSHTLPDSTSHH 269
           HSHT P STS H
Sbjct: 425 HSHTTPRSTSKH 436


>SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 157

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 190 VYSKMDELSKGMTQTGSAATTDKIQ 264
           V+S +D L   + Q+G+ +TTD I+
Sbjct: 94  VFSLLDSLCLRLIQSGNLSTTDTIR 118


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 199 KMDELSKGMTQTGSAATTDKIQENDG 276
           +++EL+K + +T   ATT + + +DG
Sbjct: 184 RINELAKQIQETSLGATTQEDESSDG 209


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 16  GYYVCLQCCYFI 51
           G YV L CCY+I
Sbjct: 314 GIYVLLLCCYYI 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,286,281
Number of Sequences: 5004
Number of extensions: 20837
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)