Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n10
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0502 - 18163192-18163435,18164000-18164154,18164243-181644...    28   2.3  
04_04_1159 - 31352922-31353098,31354117-31354267,31354581-313548...    27   4.0  
01_07_0115 - 41164227-41164452,41164515-41164601,41164757-41165313     27   4.0  
06_03_0448 - 20882398-20882798,20882816-20882858                       27   5.3  
12_01_0411 + 3276679-3276687,3277430-3277493,3278256-3278297,327...    26   7.1  
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463...    26   7.1  
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117...    26   7.1  

>09_04_0502 -
           18163192-18163435,18164000-18164154,18164243-18164447,
           18164530-18164819,18164845-18164853,18164920-18165085,
           18165170-18165258,18165365-18165432,18165843-18166164
          Length = 515

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 146 ILLWCCVXVIDVTNQCIARWTNCL 217
           ++LW C  ++  T++ + RW+ CL
Sbjct: 32  VVLWLCCALLLATSRELGRWSGCL 55


>04_04_1159 -
           31352922-31353098,31354117-31354267,31354581-31354812,
           31354902-31355112,31355791-31355909,31355994-31356176,
           31356283-31356481,31356636-31357015,31357127-31357191,
           31357925-31357990,31358427-31358501,31358781-31358852,
           31359318-31359386,31359476-31359547,31359658-31359729,
           31360126-31360230,31360282-31360353,31361053-31361230,
           31361707-31361791
          Length = 860

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +1

Query: 184 KPVYSKMDELSKGMTQTG---SAATTDKIQENDGSSNPVV 294
           K V+ K+D+ ++  T TG   S A TD    ND S NP +
Sbjct: 33  KAVFEKLDQKAEWNT-TGDPCSGAATDSTDINDSSINPAI 71


>01_07_0115 - 41164227-41164452,41164515-41164601,41164757-41165313
          Length = 289

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 205 DELSKGMTQTGSAATTDKIQEN-DG 276
           DEL +GM  T  AAT+DK++   DG
Sbjct: 115 DELRRGMWMTKDAATSDKLRRGIDG 139


>06_03_0448 - 20882398-20882798,20882816-20882858
          Length = 147

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 323 SHSKHEPFTYTTGFDEPSFS*ILSVVAALPVCVMPLDNS 207
           SH+     T T G   P      +V  ALP C +P+D+S
Sbjct: 107 SHASIGSITLTLGLSGPPL--FANVTRALPPCPIPIDHS 143


>12_01_0411 +
           3276679-3276687,3277430-3277493,3278256-3278297,
           3279047-3279063,3280011-3281258
          Length = 459

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -1

Query: 334 HVPFRIPSMNHSHTLPDSTSHHFLEFCQL*RRFLFVSCP*TIRPSCYT 191
           HV   I  M    +L     +  + FC    +F    CP  ++PSC T
Sbjct: 288 HVKGAIYWMVSRTSLCPDPPNTLVRFCLTDEKFSLFPCPCNVKPSCLT 335


>02_01_0618 -
           4629776-4630037,4630188-4630330,4631200-4631254,
           4631539-4631603,4631714-4631857,4632141-4632194,
           4632363-4632410,4632466-4632541,4632624-4632722,
           4633000-4633097,4633615-4633719,4633816-4633924,
           4634137-4634252,4634332-4634496
          Length = 512

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 81  ISLFFNDHIFYEIT 40
           IS+FF DHI+Y IT
Sbjct: 408 ISVFFQDHIYYLIT 421


>01_06_0789 -
           32010131-32010330,32010438-32010866,32011658-32011752,
           32011836-32011933,32012586-32012942,32013615-32013792,
           32013856-32013936,32014441-32014548,32014916-32015178
          Length = 602

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 340 RRHVPFRIPSMNHSHTLPDSTSHH 269
           R H+P  +P   H   LP   SHH
Sbjct: 28  RAHLPVGVPQQLHPRGLPVMRSHH 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,925,056
Number of Sequences: 37544
Number of extensions: 121073
Number of successful extensions: 317
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)