Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n09
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ691.03 |||DUF543 family protein|Schizosaccharomyces pombe|c...    29   0.26 
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    27   1.4  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.6  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   7.4  

>SPAPJ691.03 |||DUF543 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 86

 Score = 29.5 bits (63), Expect = 0.26
 Identities = 17/78 (21%), Positives = 34/78 (43%)
 Frame = +1

Query: 121 SKTDKRDFEDRYSACFVDFGLKTVTGLLIGSMMGSFFLRGYKKWPMYIGGGLGFGMAYSN 300
           S++ ++    ++  C  +  +++  GL  G +    F R    WP++ G G G G +Y++
Sbjct: 4   SQSSEQTLNYQWDVCLSNMVVQSGIGLGAGIVSSVLFFRR-AAWPVWGGLGFGLGKSYAD 62

Query: 301 CENSLNDYLLAMNPKPCS 354
               L  +       P S
Sbjct: 63  SNARLRTFHAIPKQLPAS 80


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +1

Query: 175 FGLKTVTGLLIGSMMGSFFLRGYK--KWPMYIGGGLGF 282
           F   T  G LIG + G F  + Y   +W  YI   +GF
Sbjct: 227 FACITFAGPLIGPIAGGFLAKSYLGWRWTEYITSFMGF 264


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 178 GLKTVTGLLIGSMMGSFFL 234
           G+K + G+L+G ++GS FL
Sbjct: 163 GVKALIGILVGVVVGSVFL 181


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 308 FSQLEYAIPKPRPPPMYIGH 249
           +S + Y+ P P PPP  + H
Sbjct: 363 WSNISYSPPPPPPPPELLNH 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,738,355
Number of Sequences: 5004
Number of extensions: 33832
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)