Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n09
         (461 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024136-2|AAF35960.2|  105|Caenorhabditis elegans Hypothetical ...    44   5e-05
Z50027-7|CAA90332.3|  460|Caenorhabditis elegans Hypothetical pr...    33   0.075
Z50027-6|CAO82026.1|  564|Caenorhabditis elegans Hypothetical pr...    33   0.075
AC006748-3|AAF60513.2|  382|Caenorhabditis elegans Hypothetical ...    28   2.8  
U61945-3|AAB03126.2|  451|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AC024818-1|AAK29945.2|  375|Caenorhabditis elegans Hypothetical ...    28   3.7  
U28729-7|AAO38609.1|  158|Caenorhabditis elegans Phosphodiestera...    27   6.5  
U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiestera...    27   6.5  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    27   8.6  

>AC024136-2|AAF35960.2|  105|Caenorhabditis elegans Hypothetical
           protein F54A3.5 protein.
          Length = 105

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 163 CFVDFGLKTVTGLLIGSMMGSFFLRGYKKWPMYIGGGLGFGMAYSNCENSL-NDYLL 330
           CF D  LK   G+ IG +    F +  + WP++ G G+G G  +SNC +   + Y+L
Sbjct: 24  CFADSLLKVTGGVAIGIVASVAFFKS-RSWPIWFGSGVGLGTGWSNCRHDFASPYVL 79


>Z50027-7|CAA90332.3|  460|Caenorhabditis elegans Hypothetical
           protein C39B10.2a protein.
          Length = 460

 Score = 33.5 bits (73), Expect = 0.075
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -2

Query: 265 RCTLAISCSLSRRNYP---SCCLLRALSLFSIRNQRNM 161
           RCTL ++CSL+ R YP     C +R LS   I  Q N+
Sbjct: 144 RCTLTVACSLNLRYYPMDQQLCSIRVLSYAYIAKQVNV 181


>Z50027-6|CAO82026.1|  564|Caenorhabditis elegans Hypothetical
           protein C39B10.2b protein.
          Length = 564

 Score = 33.5 bits (73), Expect = 0.075
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -2

Query: 265 RCTLAISCSLSRRNYP---SCCLLRALSLFSIRNQRNM 161
           RCTL ++CSL+ R YP     C +R LS   I  Q N+
Sbjct: 144 RCTLTVACSLNLRYYPMDQQLCSIRVLSYAYIAKQVNV 181


>AC006748-3|AAF60513.2|  382|Caenorhabditis elegans Hypothetical
           protein Y39A3B.2 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -2

Query: 265 RCTLAISCSLSRRNYP---SCCLLRALSLFSIRNQRNM 161
           R TL ++C+L  ++YP     C ++ +S   ++N+ N+
Sbjct: 104 RVTLNLACNLDLKDYPLDYQTCYIKVISYAHVKNEMNV 141


>U61945-3|AAB03126.2|  451|Caenorhabditis elegans Hypothetical
           protein C49C8.5 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 283 GMAYSNCENSLNDYLLAMNPKPCSIKKRP*TVL 381
           G  Y +C N+LN +L   N   CS+ K   T+L
Sbjct: 372 GWWYGSCGNNLNGFLYPNNNGDCSVTKFDSTLL 404


>AC024818-1|AAK29945.2|  375|Caenorhabditis elegans Hypothetical
           protein Y54H5A.2 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 303 AIRIRHPETETAADVHWPFLVASQEETTHHA 211
           A+R     TETA D H   L++SQ+E T HA
Sbjct: 309 AMRELDKGTETAEDKHKKTLLSSQQEHTLHA 339


>U28729-7|AAO38609.1|  158|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformf protein.
          Length = 158

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 265 GGGLGFGMAYSNCENSLNDYLLAMNPKPCSIKKRP*TVLP 384
           GGG GFG +    E  L+++    +P   S  + P   LP
Sbjct: 18  GGGGGFGFSSLRRELHLHNFFRTSSPSASSTSRTPPAALP 57


>U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformd protein.
          Length = 674

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 265 GGGLGFGMAYSNCENSLNDYLLAMNPKPCSIKKRP*TVLP 384
           GGG GFG +    E  L+++    +P   S  + P   LP
Sbjct: 18  GGGGGFGFSSLRRELHLHNFFRTSSPSASSTSRTPPAALP 57


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 244  CSLSRRNYPSCCLLRALSLFSIRNQRNMQS 155
            C  S+RNY  CC L +L +    ++ NM S
Sbjct: 3108 CDKSKRNYSYCCGLMSLLVRICDSRGNMDS 3137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,690,107
Number of Sequences: 27780
Number of extensions: 194101
Number of successful extensions: 521
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)