Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n05
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1464 - 27317282-27318037                                         29   3.6  
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45...    27   8.3  

>08_02_1464 - 27317282-27318037
          Length = 251

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 401 WMLALPKPATKRCVID 448
           W+LA+P PAT RC  D
Sbjct: 118 WLLAVPPPATLRCAAD 133


>11_01_0059 -
           444991-446908,447595-448218,448431-448861,450974-452293
          Length = 1430

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 307 NTLF*LLEIVLRQSIACFFLHTIWIVTRWRPLDARSAKTRY 429
           N LF L+ +  +  + C   H ++++ RWRP DA   +  Y
Sbjct: 45  NALFTLMSLY-QHPVLC---HHLFLLCRWRPADAADLRAAY 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,984,918
Number of Sequences: 37544
Number of extensions: 270769
Number of successful extensions: 686
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)