Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n05
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr...    31   0.46 
Z82073-2|CAB04925.1|  358|Caenorhabditis elegans Hypothetical pr...    31   0.60 
AC025716-13|AAL32239.1|  289|Caenorhabditis elegans Serpentine r...    31   0.60 
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ...    27   9.8  
AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm rece...    27   9.8  
AF026209-13|AAB71271.2|  351|Caenorhabditis elegans Seven tm rec...    27   9.8  

>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
           protein ZC84.6 protein.
          Length = 1474

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 318 LIVGNCLKTVDRMFFSAHNLDCHKMAAIGCSLCQNPLRSDVSSTTGFRN 464
           L VGNC ++V R ++SA   +C      GC    N   + V   T  RN
Sbjct: 443 LRVGNCDRSVRRYWYSAATRECQSFEYTGCQGNDNNFETLVDCQTFCRN 491


>Z82073-2|CAB04925.1|  358|Caenorhabditis elegans Hypothetical
           protein W06D12.4 protein.
          Length = 358

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 255 NNNFYRTIIYCTVTSSGFLITIALNNNKSVCTFDYLFILFSNNNLLHCI 109
           +N++   +I+C   +   L  +   + K V T+ YL   F+ N +LH +
Sbjct: 10  DNSYLIAVIFCVSCNILLLYLVYTKSPKHVGTYKYLMTFFALNGILHSV 58


>AC025716-13|AAL32239.1|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 64 protein.
          Length = 289

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 468 ACFGSPSSMTHRFVAGFGRASIQWPPSCDNPNCVQKKTC 352
           +CFG+     H  + G+ R ++  P  CDN NCV  KTC
Sbjct: 134 SCFGASD---HLILFGYCRYTVDVPLECDNFNCV-IKTC 168


>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 489 LERYLLSHYAGFHYIKWNFARGAKMQWV 572
           LERYL     G +Y+KW F +    Q +
Sbjct: 818 LERYLAVSTHGINYMKWIFIKSTVQQMI 845


>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 489 LERYLLSHYAGFHYIKWNFARGAKMQWV 572
           LERYL     G +Y+KW F +    Q +
Sbjct: 818 LERYLAVSTHGINYMKWIFIKSTVQQMI 845


>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
           protein.
          Length = 1139

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 489 LERYLLSHYAGFHYIKWNFARGAKMQWV 572
           LERYL     G +Y+KW F +    Q +
Sbjct: 818 LERYLAVSTHGINYMKWIFIKSTVQQMI 845


>AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm
           receptor protein 260 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -3

Query: 258 LNNNFYRTIIYCTVTSSGFLITIALNNN-KSVCTFDYLFILFSNNNLLHCIMF 103
           +N N +R +  C ++ +  LI + L  + KS+ ++ YL +  +     + I++
Sbjct: 3   INENVFRVLSACAISINFLLIILILRKSPKSLGSYKYLMLYINLFEFTYAILY 55


>AF026209-13|AAB71271.2|  351|Caenorhabditis elegans Seven tm
           receptor protein 20 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 246 FYRTIIYCTVTSSGFLITIALNNNKSVCTFDYLFILFS 133
           F  T  +CT+     +I I   +NK+V ++ YL I+FS
Sbjct: 25  FCSTSFFCTI----LIIIIVKFSNKNVGSYKYLMIIFS 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,015,043
Number of Sequences: 27780
Number of extensions: 268294
Number of successful extensions: 580
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)