Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n05
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   0.72 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   3.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   8.9  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 402 GCSLCQNPLRSDVSSTTGFRNML*TGVSHLERYLLSHYAGFHY 530
           G  +C+  LR+ VS T+ + ++L      +ERYL  ++   HY
Sbjct: 103 GLGICK--LRAYVSETSSYVSVLTIVAFSIERYLAIYHPLRHY 143


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 303 DNNYENENFSR**Q*LNNNFY 241
           +NNY N N++      NNN Y
Sbjct: 326 NNNYNNNNYNNNYNNYNNNNY 346


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = -3

Query: 231 IYCTVTSSGFLITIALNNNKSVCTFDY 151
           + C V +SG ++ +       VC +D+
Sbjct: 137 VECIVFNSGTILCVPFTTYTPVCEYDH 163


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 410 ALPKPATKRCVIDDGLPKHAVNRRL 484
           AL    +K C++    P  A+NRRL
Sbjct: 187 ALSSLFSKGCLVGTWSPDPAINRRL 211


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 410 ALPKPATKRCVIDDGLPKHAVNRRL 484
           AL    +K C++    P  A+NRRL
Sbjct: 187 ALSSLFSKGCLVGTWSPDPAINRRL 211


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 410 ALPKPATKRCVIDDGLPKHAVNRRL 484
           AL    +K C++    P  A+NRRL
Sbjct: 187 ALSSLFSKGCLVGTWSPDPAINRRL 211


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 312 CVYDNNYENEN 280
           C Y NNY N N
Sbjct: 311 CNYSNNYYNNN 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,727
Number of Sequences: 438
Number of extensions: 3524
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)