Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n03
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...   118   1e-27
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    28   1.1  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    27   2.6  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    26   5.9  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    26   5.9  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   7.8  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   7.8  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    25   7.8  

>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score =  118 bits (283), Expect = 1e-27
 Identities = 66/140 (47%), Positives = 83/140 (59%), Gaps = 24/140 (17%)
 Frame = +2

Query: 344 TRRIAICNMDWDNIKASDLMVLLNSFIPPGGIIHKISIYPSEFGLKRMQEEEVRGPIELT 523
           T R+A+ NMDWDN++A DL V L+SF PPGG + K+SIYPSEFG  RM  E V+GP    
Sbjct: 179 TNRLAVVNMDWDNLQAVDLFVALSSFCPPGGKLLKVSIYPSEFGKSRMAAEHVQGPPRDI 238

Query: 524 TEKSENLP----------------------EDGGNEE--GSTYHMEKLRRYQLNRLKYFY 631
              ++N P                      ED   EE  G+ + M KLR+YQL RL+Y+Y
Sbjct: 239 FTPADNQPSSAELHEAQKFGFDNNESDQDEEDALIEEDLGNEFDMVKLRQYQLERLRYYY 298

Query: 632 AVVECDTVTTADKLYNECDG 691
           AVVECD+V TA  +Y  CDG
Sbjct: 299 AVVECDSVRTAKVIYETCDG 318



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 147 SNILQDSRFTKYLSDPRYRQIPKHERKV 230
           SN++ D RF    SDPR+ ++ +   KV
Sbjct: 17  SNVVADPRFQSVHSDPRFSRLKRGNFKV 44


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 605 QLNRLKYFYAVVECDTVTTADKLYNECDG 691
           QL R KY   V   DTV   DK ++  DG
Sbjct: 477 QLERFKYTLRVAGSDTVLPLDKTFSSLDG 505


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 635 LHRSISIYSAGNVAVFPCGMLIPLHFHHLQ 546
           LHR   IYS   + +F C + I  +FH LQ
Sbjct: 651 LHRDWKIYS--KIPIFKCHVAIVQYFHDLQ 678


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 687 SHSLYNLSAVVTVSHSTTA*KYFNLFSW*RRSFSMWY 577
           S+S   L  V+ + HS T  ++F L SW R  +S++Y
Sbjct: 251 SYSSTQLYCVLCLDHSGTDLEHFELRSW-RECWSVFY 286


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 264 VAIQKMIVKWSMNGESWMLMLKLLKSQLGESPFAIWTGITLKHR 395
           + IQ +  ++S+  ++WMLML+ L +         W  +  KHR
Sbjct: 28  LCIQGIPDEYSLRAKAWMLMLEFLPTDRSN-----WQSVLEKHR 66


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 107  ITFITFTDVILKRFCVCITSQ 45
            +T    TDVILK F +C  SQ
Sbjct: 1073 LTSQRITDVILKAFSICAASQ 1093


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 479 KRMQEEEVRGPIELTTEKSENLPEDGGN--EEGSTYHMEKLRRYQLNRLKY 625
           K+  EE+   P+E+  EKS+++  +G +  EE  +  +E   R    +L Y
Sbjct: 847 KKTTEEKEATPMEMDEEKSQDISINGNSKKEEPKSETLENFTRVVPAQLPY 897


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +3

Query: 78  NYICKGYKSNPFLFNRTKHLLKMSNILQDSRFTKYLSDPRYRQ-IPKHERK 227
           N + +  K + FL  R          + D    KY  DP+ +Q IP  ERK
Sbjct: 126 NLVYRDIKPDNFLIGRPSSRNANMVYMVDFGMAKYYRDPKTKQHIPYSERK 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,401
Number of Sequences: 5004
Number of extensions: 49782
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)