Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n03
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616...   111   7e-25
09_03_0107 + 12412772-12413097,12413460-12413732,12414163-12414247     31   1.1  
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798...    29   4.6  
09_03_0105 + 12400722-12401041,12401427-12401699,12401788-12401827     29   4.6  
06_03_0433 - 20718726-20719895                                         29   4.6  
12_01_1054 + 10847342-10847543,10847627-10847962,10848557-108488...    28   8.0  

>07_03_0697 +
           20759176-20759817,20760592-20760708,20761422-20761696,
           20761906-20762068,20762293-20762421,20762989-20763713,
           20763853-20764081
          Length = 759

 Score =  111 bits (266), Expect = 7e-25
 Identities = 57/138 (41%), Positives = 81/138 (58%), Gaps = 14/138 (10%)
 Frame = +2

Query: 320 DAETTEESTRRIAICNMDWDNIKASDLMVLLNSFIPPGGIIHKISIYPSEFGLKRMQEEE 499
           D    ++ T R+A+ NMDWD+IKA DL +++ S +P GG +  +S+YPSEFGL+RM+ E 
Sbjct: 231 DTPMIDKETHRLAVVNMDWDHIKAVDLYMVMTSCLPKGGRVLSVSVYPSEFGLERMKIES 290

Query: 500 VRGPIELTTEKSENLPEDGGNEE---------GSTYH-----MEKLRRYQLNRLKYFYAV 637
            +GP  L      +    GG+++           T H       KLR Y+LNRL+Y+YAV
Sbjct: 291 TKGPAALVDVNGSDGEYSGGDDDDDDEEEEDSSDTEHDSEAENNKLRTYELNRLRYYYAV 350

Query: 638 VECDTVTTADKLYNECDG 691
           V CD+  TA+ LY   DG
Sbjct: 351 VVCDSSATANHLYMNLDG 368



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 141 KMSNILQDSRFTKYLSDPRYRQIPKHERKV 230
           K+   ++D RF    +DPR+R + + E KV
Sbjct: 89  KVRRAMEDERFAAARTDPRFRAMRRKEAKV 118


>09_03_0107 + 12412772-12413097,12413460-12413732,12414163-12414247
          Length = 227

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -3

Query: 632 HRSISIYSAGNVAVFP---CGMLIPLHFHHLQGDFQI 531
           H+SIS+ S     V P   CG  + L FHH  GD  +
Sbjct: 108 HKSISVCSPEKKLVVPESVCGRPLGLQFHHASGDLYV 144


>09_04_0087 +
           14476539-14476675,14478876-14479635,14479720-14479871,
           14479958-14480024,14480632-14480831,14480915-14481068,
           14481585-14481669,14481766-14481857,14482575-14482766,
           14482867-14482992,14483072-14483125,14483494-14483550,
           14484509-14484606,14484703-14485038,14485116-14485203,
           14486891-14487016,14487082-14487138,14488054-14488133,
           14488228-14488270,14488948-14489034,14489331-14489420,
           14489996-14490054,14490141-14490231,14490330-14490495,
           14490662-14490755,14491787-14492909
          Length = 1537

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +2

Query: 479 KRMQEEEVRGPIELTTEKSENLPEDGGNEEG--STYHMEKLRRYQLNRLKYFYAVVECDT 652
           ++++EEE +   E   EK +   E+ GNE+   +   +EK++  +L  + Y     E   
Sbjct: 260 EKLEEEEKKDKEEKLEEKEKENEEENGNEKDKENDNEIEKVKNTKLVHIDYILEKAETGL 319

Query: 653 VTTADKLYN 679
             T + L++
Sbjct: 320 YFTGNILHS 328


>09_03_0105 + 12400722-12401041,12401427-12401699,12401788-12401827
          Length = 210

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -3

Query: 632 HRSISIYSAGNVAVFP---CGMLIPLHFHHLQGDFQI 531
           H+S+ + S     V P   CG  + L FHH  GD  +
Sbjct: 106 HKSVGVCSPEKKLVVPESVCGRPLGLQFHHASGDLYV 142


>06_03_0433 - 20718726-20719895
          Length = 389

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +2

Query: 482 RMQEEEVRGPIELTTEKSENLPEDGGNEE 568
           RM  EEV    E T E   N+  DG NEE
Sbjct: 157 RMPHEEVAHGDESTNEDQSNVKSDGSNEE 185


>12_01_1054 +
           10847342-10847543,10847627-10847962,10848557-10848807,
           10849226-10849313,10849548-10849723,10850597-10850656,
           10850811-10850901,10851563-10851639,10852565-10852653,
           10852950-10853061,10853623-10853725,10854892-10855121
          Length = 604

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 377 DNIKASDLMVLLNSFIPPGGIIHKISIYPSEFGLKRMQEEEVRGPI 514
           + +K    M+    F+PPG +I   +IY + +G   ++E+++ G I
Sbjct: 363 EQVKDKGCMLSPYHFVPPGLLIPVTTIYDTRYG--EIEEKQISGGI 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,013,443
Number of Sequences: 37544
Number of extensions: 287656
Number of successful extensions: 801
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)