Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n02
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   2.8  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    27   3.6  
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom...    26   4.8  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    26   6.4  

>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 227 VDLSECVDNNNFHIPFVKGYFCVDSCGAGSGNRTNE 120
           + ++  V       PFV+  FCVD+C    G +  E
Sbjct: 319 IQIASIVTQYGDSTPFVRNVFCVDTCSQIVGTQVYE 354


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 628 ILTYIPVIEI-FPRVCNGDSCVMKSLNNYRN*YLASQSAARYLRDVNDGAS 479
           +LT   +I+  F R+ N +S   K + NY     ++  + +YL+ + DG S
Sbjct: 481 LLTVCNIIKAQFQRLKNANSIPAKQVENYITLVNSASLSKQYLKSIVDGVS 531


>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 170 YFCVDSCGAGSGNRTNEDASPLVIGAHEILSSSPCLYTFSF 48
           Y   DS G  SG   +   S L  G HE   S   ++TF+F
Sbjct: 450 YIVEDSMGGTSGGLYSIYLSALAKGVHESGDSELSVHTFAF 490


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 164  CVDSCGAGSGNRTNEDASPLVIGAHEILSSSPC 66
            C DS GAG  N+  E    L+  A E + S  C
Sbjct: 965  CGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,778
Number of Sequences: 5004
Number of extensions: 48791
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)