Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n02
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0536 - 4212206-4212369,4212476-4212629,4212713-4212811,421...    33   0.23 
05_01_0598 - 5366403-5366414,5366937-5367119                           31   0.94 
05_04_0165 - 18660021-18660130,18660553-18661045,18662860-18662994     31   1.2  
02_05_0329 - 27986261-27987372,27988632-27988638,27988999-279891...    30   2.2  
04_03_0811 - 19909128-19912214                                         29   5.0  
04_01_0525 - 6886920-6887298,6888650-6888882                           28   8.8  

>12_01_0536 -
           4212206-4212369,4212476-4212629,4212713-4212811,
           4212917-4213124,4214437-4214639,4214728-4214801,
           4214968-4215043,4215256-4215360
          Length = 360

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -2

Query: 342 KLGTRVVATIGVLSTFSTLE**QPVKIIICTVRSPFTVRGFE 217
           ++G    ATIG  ST  +LE  QP KI +C++ +P     FE
Sbjct: 197 QVGALFSATIGCGSTVESLEGSQPQKISVCSISNPVDASFFE 238


>05_01_0598 - 5366403-5366414,5366937-5367119
          Length = 64

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 371 ERLREGSGTERDGQDEWSGGRRGSAWLPGVYQD 469
           ER+  G G +  G D   GG+RG  W P  Y+D
Sbjct: 2   ERIENG-GRKIHGGDRQQGGKRGGGWEPRSYKD 33


>05_04_0165 - 18660021-18660130,18660553-18661045,18662860-18662994
          Length = 245

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 383 EGSGTERDGQDEWSGGRRGSAW 448
           +G G  R G+ +W  G+ GSAW
Sbjct: 80  QGGGRPRAGEGQWHNGKAGSAW 101


>02_05_0329 -
           27986261-27987372,27988632-27988638,27988999-27989128,
           27989157-27989216,27989318-27989970,27990056-27990526
          Length = 810

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 188 IPFVKGYFCVD-SCGAGSGNRTNEDASPLVIGAHEILSSSP 69
           +PF+   + +  SC    G+R +   SP ++  HE LSS P
Sbjct: 580 VPFLHSIYEISRSCRVAPGHRLDAMPSPRILAVHEPLSSLP 620


>04_03_0811 - 19909128-19912214
          Length = 1028

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 167 FCVDSCGAGSGNRTNEDASPLVIG-AHEILSSSPCLYTFS 51
           FC+D C  G+GN  ++  + +    AH  +  S   Y+F+
Sbjct: 659 FCLDCCAQGNGNNYDDQVANIKKNIAHVCIEDSRLFYSFN 698


>04_01_0525 - 6886920-6887298,6888650-6888882
          Length = 203

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 122 EDASPLVIGAHEILSSSPCLYT 57
           ED  PLV+G HE+     C YT
Sbjct: 169 EDQKPLVVGHHEVGPYRQCTYT 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,339,944
Number of Sequences: 37544
Number of extensions: 314467
Number of successful extensions: 818
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)