Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n02
         (733 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089684-1|AAL90422.1|  370|Drosophila melanogaster RH61266p pro...    32   0.93 
AF541949-2|AAN34652.1|  826|Drosophila melanogaster pol protein ...    32   0.93 
AF420242-1|AAL16060.1|  826|Drosophila melanogaster RNA-directed...    32   0.93 
S68526-1|AAD14015.2|  624|Drosophila melanogaster pol polyprotei...    29   8.6  

>AY089684-1|AAL90422.1|  370|Drosophila melanogaster RH61266p
           protein.
          Length = 370

 Score = 31.9 bits (69), Expect = 0.93
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
 Frame = +2

Query: 155 NQHRNNLSQTVCENYYYQHIRSNPRTVNGDLTVQI---IIFTGCYYSRVENVDKTPIVAT 325
           N+  N +++ + EN+  ++     +T   D+  +    +I   C Y ++EN+  T     
Sbjct: 137 NKSANTVAKAIFENFILKY--GPMKTFISDMGTEYKNNVIQDMCKYMKIENLTSTAYHHQ 194

Query: 326 TRVPSLIVQTRRTFNERLREGSGTERDGQDEW 421
           T     I ++ RTFNE +R     ++   D W
Sbjct: 195 TL--GTIERSHRTFNEYIRSYISADKTDWDVW 224


>AF541949-2|AAN34652.1|  826|Drosophila melanogaster pol protein
           protein.
          Length = 826

 Score = 31.9 bits (69), Expect = 0.93
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
 Frame = +2

Query: 155 NQHRNNLSQTVCENYYYQHIRSNPRTVNGDLTVQI---IIFTGCYYSRVENVDKTPIVAT 325
           N+  N +++ + EN+  ++     +T   D+  +    +I   C Y ++EN+  T     
Sbjct: 593 NKSANTVAKAIFENFILKY--GPMKTFISDMGTEYKNNVIQDMCKYMKIENLTSTAYHHQ 650

Query: 326 TRVPSLIVQTRRTFNERLREGSGTERDGQDEW 421
           T     I ++ RTFNE +R     ++   D W
Sbjct: 651 TL--GTIERSHRTFNEYIRSYISADKTDWDVW 680


>AF420242-1|AAL16060.1|  826|Drosophila melanogaster RNA-directed
           DNA polymerase protein.
          Length = 826

 Score = 31.9 bits (69), Expect = 0.93
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
 Frame = +2

Query: 155 NQHRNNLSQTVCENYYYQHIRSNPRTVNGDLTVQI---IIFTGCYYSRVENVDKTPIVAT 325
           N+  N +++ + EN+  ++     +T   D+  +    +I   C Y ++EN+  T     
Sbjct: 593 NKSANTVAKAIFENFILKY--GPMKTFISDMGTEYKNNVIQDMCKYMKIENLTSTAYHHQ 650

Query: 326 TRVPSLIVQTRRTFNERLREGSGTERDGQDEW 421
           T     I ++ RTFNE +R     ++   D W
Sbjct: 651 TL--GTIERSHRTFNEYIRSYISADKTDWDVW 680


>S68526-1|AAD14015.2|  624|Drosophila melanogaster pol polyprotein
           protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = +2

Query: 155 NQHRNNLSQTVCENYYYQHIRSNPRTVNGDLTVQI---IIFTGCYYSRVENVDKTPIVAT 325
           N+   ++++ V EN+  ++     +T+  D+  +    II   C Y +++N+  T     
Sbjct: 391 NKSAKSVAKAVFENFILKY--GPMKTIITDMGTEYKNQIIDDLCKYMKIKNITSTAHHHQ 448

Query: 326 TRVPSLIVQTRRTFNERLREGSGTERDGQDEW 421
           T     I ++ RTFNE +R     ++   D W
Sbjct: 449 TL--GTIERSHRTFNEYVRSYISVDKTDWDIW 478


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,169,142
Number of Sequences: 53049
Number of extensions: 561417
Number of successful extensions: 1356
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3293648160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)