Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n02
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ...    29   3.4  
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel...    29   3.4  
U58738-1|AAB00602.1|  290|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
            helicase-4 protein.
          Length = 1156

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +2

Query: 266  FTGCYYSRVENVDKTPIVATTRVPSLIVQTRRTFNERLREGSGTERDGQDEWS 424
            FTG   + V+  + T I+    + S++ + ++   E L EG+G + +G D+W+
Sbjct: 1100 FTGTSTAFVDVENDTDIIPC--LVSILNEAKKEVPEWLTEGAGHQEEGGDDWN 1150


>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line helicase
            protein 4 protein.
          Length = 1156

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +2

Query: 266  FTGCYYSRVENVDKTPIVATTRVPSLIVQTRRTFNERLREGSGTERDGQDEWS 424
            FTG   + V+  + T I+    + S++ + ++   E L EG+G + +G D+W+
Sbjct: 1100 FTGTSTAFVDVENDTDIIPC--LVSILNEAKKEVPEWLTEGAGHQEEGGDDWN 1150


>U58738-1|AAB00602.1|  290|Caenorhabditis elegans Hypothetical
           protein F31A9.4 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -1

Query: 169 ISVLIHAERVLEIERTKTHPH*LSAHMKFFQVLPVCTLFR 50
           ++++ H   +++I   K+     SA + FF +L +C+L+R
Sbjct: 4   VTIITHVFTIMKIYPLKSFYGTASAQLLFFVLLKICSLYR 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,588,480
Number of Sequences: 27780
Number of extensions: 285145
Number of successful extensions: 665
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)