Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29n02
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.0  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +2

Query: 155 NQHRNNLSQTVCENYYYQHIRSNPRTVNGDLTVQIIIFT 271
           N   N  + ++ E Y+      N    N  +T   IIFT
Sbjct: 5   NNETNITNSSITETYFVSAYNLNQEDSNWIITNSFIIFT 43


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -1

Query: 574 SCVMKSLNNYRN*YLASQSAARYLRDVND 488
           S V+  +NN     + +  +++Y+R+ ND
Sbjct: 188 SSVVTGMNNIETYIVNTNYSSKYMREYND 216


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 318 TIGVLSTFSTLE**QPVKIIICT 250
           T+ V +  ST+E   PVK ++C+
Sbjct: 15  TMSVKNEISTVEPVDPVKSLVCS 37


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 247 HCTDYNLHRLLLFES*KCRQNTDCCND 327
           +C D NL +L LF +   +QN +   D
Sbjct: 594 NCLDPNLPKLALFATKDIKQNEEITFD 620


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +1

Query: 487 HHLHHAN 507
           HH+HHAN
Sbjct: 279 HHVHHAN 285


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 137 QNPLRMNQHRNNLSQTVCENYYYQHIRSN 223
           + PL   QH N L++        QH R N
Sbjct: 288 EEPLTTIQHNNCLTRIPSTRINKQHTRGN 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,270
Number of Sequences: 438
Number of extensions: 3803
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)