Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29m23
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 204 7e-54
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 57 3e-09
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 31 0.12
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 31 0.22
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 28 1.5
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 28 1.5
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 27 2.7
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po... 27 3.5
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 26 6.2
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 8.2
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 25 8.2
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 25 8.2
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 25 8.2
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 204 bits (499), Expect = 7e-54
Identities = 93/159 (58%), Positives = 123/159 (77%)
Frame = +3
Query: 228 MVLADLGRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVI 407
MV ADLGR++ +AL S+AT +NEE+++++LK IC ALLE DVN+RLV+ LR N++ I
Sbjct: 1 MVFADLGRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKI 60
Query: 408 DFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTK 587
+ + G+N +R++Q AVF EL LVDP V + P KG+P+VIM VGLQGSGKTTTC+K
Sbjct: 61 NVSTLPQGINGKRIVQKAVFDELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSK 120
Query: 588 LAYHYLRKNWKSCLVCADTFRAGAYDQVQQNCTKARIPF 704
LA HY R+ KSCLV ADTFRAGA+DQ++QN KAR+P+
Sbjct: 121 LALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPY 159
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 56.8 bits (131), Expect = 3e-09
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Frame = +3
Query: 294 INEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQSAVFKE 473
+ EE L+ +LKQ+ L + +V + L E+V+A + ++ + + A
Sbjct: 256 LKEEDLSPILKQMQEHLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVNKAFRDR 315
Query: 474 LVKLVDPG--------VKPYQPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRKNWKSCL 629
L +++ P ++ + + +P I +G+ G GK+TT K+AY L N++ +
Sbjct: 316 LTQILTPSTSLDLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILV 375
Query: 630 VCADTFRAGAYDQV 671
DTFR+GA +Q+
Sbjct: 376 AACDTFRSGAIEQL 389
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 31.5 bits (68), Expect = 0.12
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 462 VFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRKNWKSCLVCAD 641
+ +++K ++ KP +G+P ++ G QGSGK+T + L RKN D
Sbjct: 7 IVDKILKFLEKQPKP----EGRPFILGISGPQGSGKSTLASALDTELTRKNESVVKFSLD 62
Query: 642 TFRAGAYDQVQ 674
F +QV+
Sbjct: 63 DFYLTHAEQVE 73
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 30.7 bits (66), Expect = 0.22
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 525 KPNVIMFVGLQGSGKTTTCTKLAYHYLRKN 614
KP I+ VG+ GSGKTT +L H KN
Sbjct: 7 KPCAIIVVGMAGSGKTTFMQQLNAHLHSKN 36
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 315 SMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQ 455
S Q+ ALL+ D + LV+NL +V + DE+ + +R ++
Sbjct: 807 SKTPQVVGALLDIDCDEELVQNLLMSVVGQVPVDELVEEVERRNRLK 853
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 312 NSMLKQICAALLEADVNIRLVKNLRENVRA--VIDFDEMAGGLNKRRMIQSAVFKELVKL 485
NS++++I EA N R N RA + M G N +R ++SAVF VKL
Sbjct: 131 NSVVEKISQKNQEARSRANSRVNSRANSRANSSVSLAGMDGSPNWKRKMKSAVFGSRVKL 190
Query: 486 VD 491
D
Sbjct: 191 ND 192
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 417 EMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVK-GKPNVIMFVGLQGSGKTTTCTKLA 593
EM GGL K Q KE+++L + ++ + +P I+ G G+GKT +A
Sbjct: 145 EMVGGLEK----QIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVA 200
Query: 594 YH 599
+H
Sbjct: 201 HH 202
>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 536 YIRLPFDGLVWFNPGIYKL 480
Y+R+P +GL + N G+YKL
Sbjct: 338 YLRIPKEGLYYRNFGLYKL 356
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 6.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2
Query: 506 IPARQREA*CNNVCGITRIWKDHNM 580
I R++ C N+C +++++ DH M
Sbjct: 256 IDGRKQRTWCRNICLLSKLFLDHKM 280
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 540 MFVGLQGSGKTTTCTKLAYHYLRKNWKSCL 629
+ +G+ G+GKTTT + L L K K L
Sbjct: 952 LILGMPGTGKTTTISSLIRSLLAKKKKILL 981
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 531 NVIMFVGLQGSGKTTTCTKLA 593
NVI +G G+GK T C +LA
Sbjct: 3 NVIFVLGGPGAGKGTQCDRLA 23
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 501 KPYQPVKGKPNV-IMFVGLQGSGKTTTCTKL 590
K +Q + GK + I+ VGL +GKTT KL
Sbjct: 7 KLFQSLFGKREMRILMVGLDAAGKTTILYKL 37
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 537 IMFVGLQGSGKTTTCTKLAYHYLRKNWKS 623
+ FVGL SGKT++ KL+ YL W S
Sbjct: 12 VCFVGLPASGKTSSAMKLS-RYL--TWMS 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,310
Number of Sequences: 5004
Number of extensions: 61528
Number of successful extensions: 181
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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