Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29m23
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0874 + 32646039-32646269,32646351-32646450,32647400-326474... 163 1e-40
05_06_0027 - 25029725-25030017,25030097-25030211,25030347-250305... 163 2e-40
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 71 9e-13
01_07_0240 - 42227132-42227245,42227332-42227394,42227484-422275... 58 5e-09
02_05_0493 + 29484285-29484467,29484757-29484900,29485014-294850... 36 0.032
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 32 0.52
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399... 31 1.2
12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045 30 2.1
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 30 2.1
07_03_0057 + 12872946-12873152,12873371-12873421,12876335-128764... 30 2.1
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 29 2.8
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 28 6.4
>01_06_0874 +
32646039-32646269,32646351-32646450,32647400-32647461,
32647503-32647609,32647689-32647839,32647925-32648073,
32648557-32648657,32648730-32648887,32648968-32649015,
32649028-32649142,32649212-32649543
Length = 517
Score = 163 bits (396), Expect = 1e-40
Identities = 79/164 (48%), Positives = 114/164 (69%), Gaps = 5/164 (3%)
Frame = +3
Query: 228 MVLADLGRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVI 407
MVLA LG I+ AL +S AT+I+E+VL+ L +I ALL++DV ++V++++ N++ ++
Sbjct: 1 MVLAQLGGSISRALAQMSNATVIDEKVLSDCLNEISRALLQSDVQFKMVRDMQSNIKRIV 60
Query: 408 DFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGS-----GKT 572
+ + +A G NKRR+IQ AVF EL ++DPG + P KGKP V+MFVGLQ S
Sbjct: 61 NLETLAAGTNKRRIIQQAVFTELCNMLDPGKPSFTPKKGKPCVVMFVGLQDSLIELQYSI 120
Query: 573 TTCTKLAYHYLRKNWKSCLVCADTFRAGAYDQVQQNCTKARIPF 704
+ ++ LRK +K LVCADTFRAGA+DQ++QN TKA+IPF
Sbjct: 121 PMTSTVSMQVLRKGFKPALVCADTFRAGAFDQLKQNATKAKIPF 164
>05_06_0027 -
25029725-25030017,25030097-25030211,25030347-25030504,
25030582-25030682,25030846-25030994,25031089-25031239,
25031329-25031482,25032249-25032321,25032446-25032676
Length = 474
Score = 163 bits (395), Expect = 2e-40
Identities = 79/159 (49%), Positives = 109/159 (68%)
Frame = +3
Query: 228 MVLADLGRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVI 407
MVLA LG I+ AL +S AT+I+++ L +I ALL++DV IR+V ++R N+R +
Sbjct: 1 MVLAQLGGSISRALAQMSNATVIDDKAFADCLHEIARALLQSDVQIRMVSDMRANIRRAV 60
Query: 408 DFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTK 587
+ D + G NKRR+IQ AVF EL ++DPG + P KGKP+ SGKTTTCTK
Sbjct: 61 NLDALPAGTNKRRIIQQAVFAELCNMLDPGKPSFTPTKGKPS---------SGKTTTCTK 111
Query: 588 LAYHYLRKNWKSCLVCADTFRAGAYDQVQQNCTKARIPF 704
A+++ K +K LVCADTFRAGA+DQ++QN TKA+IP+
Sbjct: 112 YAHYHQLKGFKPSLVCADTFRAGAFDQLKQNATKAKIPY 150
>08_02_1023 - 23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 70.9 bits (166), Expect = 9e-13
Identities = 42/158 (26%), Positives = 84/158 (53%), Gaps = 7/158 (4%)
Frame = +3
Query: 258 TTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLN 437
++ +S++ ++ + + LK + L+ +V + + L E+V A ++ ++
Sbjct: 747 SSMFKSIAGNNVLEKSDIQPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLGSFTR 806
Query: 438 KRRMIQSAVFKELVKLVDP--GVKPYQPV-----KGKPNVIMFVGLQGSGKTTTCTKLAY 596
+Q+A+ + L++++ P + + V +GKP VI+FVG+ G GK+T K+AY
Sbjct: 807 ISSTVQTAMEEALLRILTPRRSIDILRDVHAAKERGKPYVIVFVGVNGVGKSTNLAKVAY 866
Query: 597 HYLRKNWKSCLVCADTFRAGAYDQVQQNCTKARIPFME 710
L+ N L DTFR+GA +Q++ + + +IP E
Sbjct: 867 WLLQHNLSVSLAACDTFRSGAVEQLRTHARRLQIPIFE 904
>01_07_0240 -
42227132-42227245,42227332-42227394,42227484-42227552,
42227716-42227798,42228056-42228176,42228335-42228372,
42228932-42228990,42229076-42229149,42229241-42229753
Length = 377
Score = 58.4 bits (135), Expect = 5e-09
Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 7/137 (5%)
Frame = +3
Query: 285 ATIINEEVLN-SMLKQICAALLEAD----VNIRLVKNLRENVRAVIDFDEMAGGLNKRRM 449
A +++ LN S L ALL +D ++ R+V LRE +R G L
Sbjct: 118 ALLLSSFFLNVSCLVSCTQALLVSDFGPKISFRIVDTLREEIRD--------GKLKSGAE 169
Query: 450 IQSAVFKELVKLV-DPGVKP-YQPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRKNWKS 623
I+ A+ + +++L+ G P Q KP VIM VG+ G GKTT+ KLAY + + K
Sbjct: 170 IKEALKRCILELLTSKGGNPELQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRFKNEGVKV 229
Query: 624 CLVCADTFRAGAYDQVQ 674
+ DTFRA A DQ++
Sbjct: 230 LMAAGDTFRAAARDQLE 246
>02_05_0493 +
29484285-29484467,29484757-29484900,29485014-29485088,
29485167-29485354,29485441-29485606,29485698-29486099,
29486210-29486341
Length = 429
Score = 35.9 bits (79), Expect = 0.032
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 528 PNVIMFVGLQGSGKTTTCTKLAYHYLRKNWKSCLV 632
P ++ F+G GSGKTT A +Y + K+CLV
Sbjct: 39 PKLVTFLGKGGSGKTTAAAVAAQYYASEGLKTCLV 73
>11_01_0334 +
2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 31.9 bits (69), Expect = 0.52
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 21/131 (16%)
Frame = +3
Query: 228 MVLADLGRKITTALQS----LSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENV 395
+V A++ ++TT L+S L ++ +E + ++ I ALLEADV++ +V+ ++
Sbjct: 66 VVRAEMFGQLTTGLESAWNKLRGVDVLTKENIVEPMRDIRRALLEADVSLPVVRRFVSSI 125
Query: 396 -RAVIDFDEMAGGLNKRRMIQS----------------AVFKELVKLVDPGVKPYQPVKG 524
+ D + G +++++++ V ELVKL+ V K
Sbjct: 126 SEKALGSDLIRGVRPEQQLVKTNLCAFSTGQITYSVVQIVHDELVKLMGGEVSDLVFAKS 185
Query: 525 KPNVIMFVGLQ 557
P VI+ GLQ
Sbjct: 186 GPTVILLAGLQ 196
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/84 (23%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Frame = +3
Query: 228 MVLADLGRKITTALQS----LSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENV 395
+V A++ ++TT L+S L + ++ + ++ I ALLEADV++ +V++ E+V
Sbjct: 525 VVRAEMFGQLTTGLESAWNKLRGTDQLTKDNIAEPMRDIRRALLEADVSLPVVRSFIESV 584
Query: 396 -RAVIDFDEMAGGLNKRRMIQSAV 464
+ D + G +++++++++
Sbjct: 585 TEKAVGTDVIRGVKPEQQLVKTSL 608
>01_07_0111 -
41137822-41138973,41139453-41139540,41139850-41139969,
41140165-41140211,41140796-41141029,41141305-41141505,
41141506-41143407,41144140-41145303,41145574-41145879
Length = 1737
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +3
Query: 498 VKPYQPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRKNWKSCLVCADTFRAG 656
V+ ++ ++ + V+ F+ + T L+Y+Y++ N+K C C +F G
Sbjct: 395 VEAWRDIRDRKIVLDFI-VDNRRDTLERVLLSYYYMKPNYKMCFTCLASFSKG 446
>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
Length = 1294
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 534 VIMFVGLQGSGKTTTCTKLAYHYLRKNWKSCLVC-ADTF 647
++ +G G GKTT ++ +RKN+K VC +D F
Sbjct: 241 ILSLIGHGGMGKTTLAQRVCEEMVRKNFKVIWVCVSDRF 279
>07_03_0471 +
18501496-18502104,18503009-18503260,18503367-18503537,
18503693-18503743,18503868-18503960,18504125-18504220,
18504318-18504368,18504452-18504570,18504909-18505017,
18505391-18505513,18505590-18505661,18505963-18506034,
18506125-18506191,18506260-18506402,18506494-18506565,
18506632-18506760,18507317-18507472,18507579-18507692,
18507791-18507889,18507974-18508051,18508402-18508536,
18509081-18509155,18509247-18509361,18509458-18509828,
18509903-18509965,18510049-18510120,18510285-18510413,
18510512-18510628,18510902-18511018
Length = 1289
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 525 KPNVIMFVGLQGSGKTTTCTKLAYHYLRKNWKSCLVCA 638
KP + + G G+GKT T + YH ++ LVCA
Sbjct: 527 KP-ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 563
>07_03_0057 +
12872946-12873152,12873371-12873421,12876335-12876480,
12876567-12876756
Length = 197
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 525 KPNVIMFVGLQGSGKTTTCTKLA 593
+PNV++ G G+GKTTTC+ LA
Sbjct: 12 RPNVLV-TGTPGTGKTTTCSLLA 33
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 471 ELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLR 608
EL+K++ +P +P K K V+ VGL G GKTT ++ YH+L+
Sbjct: 174 ELIKMLRIEDEP-EPSK-KLVVVSIVGLGGLGKTTLANQV-YHHLK 216
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 321 LKQICAALLEADVNIRLVKNL--RENVRAVIDFDEMAGGLNKRRMIQSAVFKELVKLVDP 494
L +C A+ + +V V + + NV+ + DFD++ G MI S F++ KL D
Sbjct: 4969 LVTVCRAMSQLEVGQFAVASFGKKGNVKVLHDFDQVFNGEAGTNMISSLSFEQDNKLEDE 5028
Query: 495 GV 500
V
Sbjct: 5029 PV 5030
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,764,573
Number of Sequences: 37544
Number of extensions: 346649
Number of successful extensions: 881
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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