Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29m23
(717 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X86373-1|CAA60132.1| 504|Homo sapiens SRP 54 protein. 272 8e-73
U51920-1|AAC50994.1| 504|Homo sapiens signal recognition partic... 272 8e-73
BC003389-1|AAH03389.1| 504|Homo sapiens signal recognition part... 272 8e-73
BC000652-1|AAH00652.1| 504|Homo sapiens signal recognition part... 272 8e-73
X06272-1|CAA29608.1| 638|Homo sapiens protein ( Human mRNA for ... 50 6e-06
BC013583-1|AAH13583.1| 638|Homo sapiens signal recognition part... 50 6e-06
BC009110-1|AAH09110.1| 638|Homo sapiens signal recognition part... 50 6e-06
BC001162-1|AAH01162.1| 638|Homo sapiens signal recognition part... 50 6e-06
CR457025-1|CAG33306.1| 638|Homo sapiens SRPR protein. 50 1e-05
BC022031-1|AAH22031.1| 421|Homo sapiens chromosome 6 open readi... 33 1.0
AL133472-2|CAI19668.1| 421|Homo sapiens RP1-70A9.1 protein. 33 1.0
AL133472-1|CAI19667.1| 751|Homo sapiens RP1-70A9.1 protein. 33 1.0
AL121788-2|CAI22499.1| 421|Homo sapiens RP1-70A9.1 protein. 33 1.0
AL121788-1|CAI22498.1| 751|Homo sapiens RP1-70A9.1 protein. 33 1.0
AK055538-1|BAB70945.1| 421|Homo sapiens protein ( Homo sapiens ... 33 1.0
BC001116-1|AAH01116.1| 194|Homo sapiens adenylate kinase 1 prot... 30 9.5
>X86373-1|CAA60132.1| 504|Homo sapiens SRP 54 protein.
Length = 504
Score = 272 bits (667), Expect = 8e-73
Identities = 127/159 (79%), Positives = 145/159 (91%)
Frame = +3
Query: 228 MVLADLGRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVI 407
MVLADLGRKIT+AL+SLS ATIINEEVLN+MLK++C ALLEADVNI+LVK LRENV++ I
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 408 DFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTK 587
D +EMA GLNKR+MIQ AVFKELVKLVDPGVK + P KGK NVIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 588 LAYHYLRKNWKSCLVCADTFRAGAYDQVQQNCTKARIPF 704
LAY+Y RK WK+CL+CADTFRAGA+DQ++QN TKARIPF
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159
>U51920-1|AAC50994.1| 504|Homo sapiens signal recognition particle
protein.
Length = 504
Score = 272 bits (667), Expect = 8e-73
Identities = 127/159 (79%), Positives = 145/159 (91%)
Frame = +3
Query: 228 MVLADLGRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVI 407
MVLADLGRKIT+AL+SLS ATIINEEVLN+MLK++C ALLEADVNI+LVK LRENV++ I
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 408 DFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTK 587
D +EMA GLNKR+MIQ AVFKELVKLVDPGVK + P KGK NVIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 588 LAYHYLRKNWKSCLVCADTFRAGAYDQVQQNCTKARIPF 704
LAY+Y RK WK+CL+CADTFRAGA+DQ++QN TKARIPF
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159
>BC003389-1|AAH03389.1| 504|Homo sapiens signal recognition
particle 54kDa protein.
Length = 504
Score = 272 bits (667), Expect = 8e-73
Identities = 127/159 (79%), Positives = 145/159 (91%)
Frame = +3
Query: 228 MVLADLGRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVI 407
MVLADLGRKIT+AL+SLS ATIINEEVLN+MLK++C ALLEADVNI+LVK LRENV++ I
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 408 DFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTK 587
D +EMA GLNKR+MIQ AVFKELVKLVDPGVK + P KGK NVIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 588 LAYHYLRKNWKSCLVCADTFRAGAYDQVQQNCTKARIPF 704
LAY+Y RK WK+CL+CADTFRAGA+DQ++QN TKARIPF
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159
>BC000652-1|AAH00652.1| 504|Homo sapiens signal recognition
particle 54kDa protein.
Length = 504
Score = 272 bits (667), Expect = 8e-73
Identities = 127/159 (79%), Positives = 145/159 (91%)
Frame = +3
Query: 228 MVLADLGRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVI 407
MVLADLGRKIT+AL+SLS ATIINEEVLN+MLK++C ALLEADVNI+LVK LRENV++ I
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 408 DFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTK 587
D +EMA GLNKR+MIQ AVFKELVKLVDPGVK + P KGK NVIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 588 LAYHYLRKNWKSCLVCADTFRAGAYDQVQQNCTKARIPF 704
LAY+Y RK WK+CL+CADTFRAGA+DQ++QN TKARIPF
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159
>X06272-1|CAA29608.1| 638|Homo sapiens protein ( Human mRNA for
docking protein (signal recognition particle receptor).
).
Length = 638
Score = 50.4 bits (115), Expect = 6e-06
Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Frame = +3
Query: 270 QSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRM 449
+SLSR + E VL+ M + A + AD+ ++L +++ + + M
Sbjct: 331 KSLSREDM--ESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKV----MGTFSTVTST 384
Query: 450 IQSAVFKELVKLVDPG--VKPYQPV-----KGKPNVIMFVGLQGSGKTTTCTKLAYHYLR 608
++ A+ + LV+++ P V + + + +P V+ F G+ G GK+T K+++ L
Sbjct: 385 VKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLE 444
Query: 609 KNWKSCLVCADTFRAGAYDQVQ 674
+ + DTFRAGA +Q++
Sbjct: 445 NGFSVLIAACDTFRAGAVEQLR 466
>BC013583-1|AAH13583.1| 638|Homo sapiens signal recognition
particle receptor ('docking protein') protein.
Length = 638
Score = 50.4 bits (115), Expect = 6e-06
Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Frame = +3
Query: 270 QSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRM 449
+SLSR + E VL+ M + A + AD+ ++L +++ + + M
Sbjct: 331 KSLSREDM--ESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKV----MGTFSTVTST 384
Query: 450 IQSAVFKELVKLVDPG--VKPYQPV-----KGKPNVIMFVGLQGSGKTTTCTKLAYHYLR 608
++ A+ + LV+++ P V + + + +P V+ F G+ G GK+T K+++ L
Sbjct: 385 VKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLE 444
Query: 609 KNWKSCLVCADTFRAGAYDQVQ 674
+ + DTFRAGA +Q++
Sbjct: 445 NGFSVLIAACDTFRAGAVEQLR 466
>BC009110-1|AAH09110.1| 638|Homo sapiens signal recognition
particle receptor ('docking protein') protein.
Length = 638
Score = 50.4 bits (115), Expect = 6e-06
Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Frame = +3
Query: 270 QSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRM 449
+SLSR + E VL+ M + A + AD+ ++L +++ + + M
Sbjct: 331 KSLSREDM--ESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKV----MGTFSTVTST 384
Query: 450 IQSAVFKELVKLVDPG--VKPYQPV-----KGKPNVIMFVGLQGSGKTTTCTKLAYHYLR 608
++ A+ + LV+++ P V + + + +P V+ F G+ G GK+T K+++ L
Sbjct: 385 VKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLE 444
Query: 609 KNWKSCLVCADTFRAGAYDQVQ 674
+ + DTFRAGA +Q++
Sbjct: 445 NGFSVLIAACDTFRAGAVEQLR 466
>BC001162-1|AAH01162.1| 638|Homo sapiens signal recognition
particle receptor ('docking protein') protein.
Length = 638
Score = 50.4 bits (115), Expect = 6e-06
Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Frame = +3
Query: 270 QSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRM 449
+SLSR + E VL+ M + A + AD+ ++L +++ + + M
Sbjct: 331 KSLSREDM--ESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKV----MGTFSTVTST 384
Query: 450 IQSAVFKELVKLVDPG--VKPYQPV-----KGKPNVIMFVGLQGSGKTTTCTKLAYHYLR 608
++ A+ + LV+++ P V + + + +P V+ F G+ G GK+T K+++ L
Sbjct: 385 VKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLE 444
Query: 609 KNWKSCLVCADTFRAGAYDQVQ 674
+ + DTFRAGA +Q++
Sbjct: 445 NGFSVLIAACDTFRAGAVEQLR 466
>CR457025-1|CAG33306.1| 638|Homo sapiens SRPR protein.
Length = 638
Score = 49.6 bits (113), Expect = 1e-05
Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Frame = +3
Query: 270 QSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRM 449
+SLSR + E VL+ M + A + AD+ ++L +++ + + M
Sbjct: 331 KSLSREDM--ESVLDKMRDHLIAKNVAADIAVQLWESVANKLEGKV----MGTFSTVTST 384
Query: 450 IQSAVFKELVKLVDPG--VKPYQPV-----KGKPNVIMFVGLQGSGKTTTCTKLAYHYLR 608
++ A+ + LV+++ P V + + + +P V+ F G+ G GK+T K+++ L
Sbjct: 385 VKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLE 444
Query: 609 KNWKSCLVCADTFRAGAYDQVQ 674
+ + DTFRAGA +Q++
Sbjct: 445 NGFSVLIAACDTFRAGAVEQLR 466
>BC022031-1|AAH22031.1| 421|Homo sapiens chromosome 6 open reading
frame 199 protein.
Length = 421
Score = 33.1 bits (72), Expect = 1.0
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 501 KPY--QPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRK 611
+PY P+ G P + +G Q SGKTT C LA +Y K
Sbjct: 380 RPYLLPPMPGPPCKVFILGPQYSGKTTLCNMLAENYKGK 418
>AL133472-2|CAI19668.1| 421|Homo sapiens RP1-70A9.1 protein.
Length = 421
Score = 33.1 bits (72), Expect = 1.0
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 501 KPY--QPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRK 611
+PY P+ G P + +G Q SGKTT C LA +Y K
Sbjct: 380 RPYLLPPMPGPPCKVFILGPQYSGKTTLCNMLAENYKGK 418
>AL133472-1|CAI19667.1| 751|Homo sapiens RP1-70A9.1 protein.
Length = 751
Score = 33.1 bits (72), Expect = 1.0
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 501 KPY--QPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRK 611
+PY P+ G P + +G Q SGKTT C LA +Y K
Sbjct: 380 RPYLLPPMPGPPCKVFILGPQYSGKTTLCNMLAENYKGK 418
>AL121788-2|CAI22499.1| 421|Homo sapiens RP1-70A9.1 protein.
Length = 421
Score = 33.1 bits (72), Expect = 1.0
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 501 KPY--QPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRK 611
+PY P+ G P + +G Q SGKTT C LA +Y K
Sbjct: 380 RPYLLPPMPGPPCKVFILGPQYSGKTTLCNMLAENYKGK 418
>AL121788-1|CAI22498.1| 751|Homo sapiens RP1-70A9.1 protein.
Length = 751
Score = 33.1 bits (72), Expect = 1.0
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 501 KPY--QPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRK 611
+PY P+ G P + +G Q SGKTT C LA +Y K
Sbjct: 380 RPYLLPPMPGPPCKVFILGPQYSGKTTLCNMLAENYKGK 418
>AK055538-1|BAB70945.1| 421|Homo sapiens protein ( Homo sapiens
cDNA FLJ30976 fis, clone HHDPC2000055, weakly similar to
ADENYLATE KINASE, CHLOROPLAST (EC 2.7.4.3). ).
Length = 421
Score = 33.1 bits (72), Expect = 1.0
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 501 KPY--QPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRK 611
+PY P+ G P + +G Q SGKTT C LA +Y K
Sbjct: 380 RPYLLPPMPGPPCKVFILGPQYSGKTTLCNMLAENYKGK 418
>BC001116-1|AAH01116.1| 194|Homo sapiens adenylate kinase 1
protein.
Length = 194
Score = 29.9 bits (64), Expect = 9.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 525 KPNVIMFVGLQGSGKTTTCTKLAYHY 602
K N+I VG GSGK T C K+ Y
Sbjct: 7 KTNIIFVVGGPGSGKGTQCEKIVQKY 32
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,748,249
Number of Sequences: 237096
Number of extensions: 2070065
Number of successful extensions: 3305
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3305
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -