Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29m23
(717 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68161-12|CAA92301.1| 496|Caenorhabditis elegans Hypothetical p... 239 1e-63
Z54271-9|CAA91040.1| 496|Caenorhabditis elegans Hypothetical pr... 239 1e-63
AC199169-1|ABO33259.1| 450|Caenorhabditis elegans Hypothetical ... 32 0.36
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr... 29 4.4
AC006679-8|AAK84470.1| 630|Caenorhabditis elegans Hypothetical ... 29 4.4
U41558-2|AAK39245.2| 457|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical pr... 28 7.7
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi... 28 7.7
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi... 28 7.7
>Z68161-12|CAA92301.1| 496|Caenorhabditis elegans Hypothetical
protein F21D5.7 protein.
Length = 496
Score = 239 bits (585), Expect = 1e-63
Identities = 107/159 (67%), Positives = 133/159 (83%)
Frame = +3
Query: 228 MVLADLGRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVI 407
MVLADLGRKI A+ L ++T+INE L+ MLK++C AL+E+DV+IRLVK L++NV+ I
Sbjct: 1 MVLADLGRKIRNAIGKLGQSTVINEGELDLMLKEVCTALIESDVHIRLVKQLKDNVKKAI 60
Query: 408 DFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTK 587
+F+E+ GG NKRR IQ VF EL+KLVDPGV P+ P KG+ NV MFVGLQGSGKTTTCTK
Sbjct: 61 NFEEIVGGANKRRYIQKTVFNELLKLVDPGVTPFTPTKGRRNVFMFVGLQGSGKTTTCTK 120
Query: 588 LAYHYLRKNWKSCLVCADTFRAGAYDQVQQNCTKARIPF 704
+AY+Y RK WK+CL+CADTFRAGA+DQ++QN TKARIPF
Sbjct: 121 MAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159
>Z54271-9|CAA91040.1| 496|Caenorhabditis elegans Hypothetical
protein F21D5.7 protein.
Length = 496
Score = 239 bits (585), Expect = 1e-63
Identities = 107/159 (67%), Positives = 133/159 (83%)
Frame = +3
Query: 228 MVLADLGRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVI 407
MVLADLGRKI A+ L ++T+INE L+ MLK++C AL+E+DV+IRLVK L++NV+ I
Sbjct: 1 MVLADLGRKIRNAIGKLGQSTVINEGELDLMLKEVCTALIESDVHIRLVKQLKDNVKKAI 60
Query: 408 DFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTK 587
+F+E+ GG NKRR IQ VF EL+KLVDPGV P+ P KG+ NV MFVGLQGSGKTTTCTK
Sbjct: 61 NFEEIVGGANKRRYIQKTVFNELLKLVDPGVTPFTPTKGRRNVFMFVGLQGSGKTTTCTK 120
Query: 588 LAYHYLRKNWKSCLVCADTFRAGAYDQVQQNCTKARIPF 704
+AY+Y RK WK+CL+CADTFRAGA+DQ++QN TKARIPF
Sbjct: 121 MAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159
>AC199169-1|ABO33259.1| 450|Caenorhabditis elegans Hypothetical
protein F38A1.8 protein.
Length = 450
Score = 32.3 bits (70), Expect = 0.36
Identities = 27/120 (22%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Frame = +3
Query: 294 INEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQSAVFKE 473
++ E LN +++++ L+ +V + + ++V + ++ + + +++AV +
Sbjct: 327 LSAEDLNPLIEKMRENLILKNVASEPAEKICQSVVSKLEGKVVNNFSRVAQEVKTAVRES 386
Query: 474 LVKLVDPG-----VKPYQPVK--GKPNVIMFVGLQGSGKTTTCTKLAYHYLRKNWKSCLV 632
LV+L+ P ++ K G+P VI+F G+ G GK+T K+ + +L +N L+
Sbjct: 387 LVQLLTPKHRVDILRDVIEAKRDGRPYVIVFCGVNGVGKSTNLAKITF-WLTENKHRVLI 445
>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical
protein T20G5.1 protein.
Length = 1681
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 300 EEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQ 455
++V + L + ALL+ D + +K L N R D DE+ + KR ++
Sbjct: 807 QKVNAARLPIVVGALLDVDCSEDAIKQLIINTRGKFDIDELVEEVEKRNRLK 858
>AC006679-8|AAK84470.1| 630|Caenorhabditis elegans Hypothetical
protein R13A5.9 protein.
Length = 630
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 35 GILNFIAYRKAQIN*FFFVLAYNNY*DVRKKLLCFLINIYNYLQVKSV-NSW 187
GIL+ + + I F+ N Y VR LC +N + ++ + + N W
Sbjct: 421 GILSVVNHASEIITYFYVFKLINKYGHVRVMYLCLAVNFFRFMALSILDNPW 472
>U41558-2|AAK39245.2| 457|Caenorhabditis elegans Hypothetical
protein K02B2.1 protein.
Length = 457
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/55 (36%), Positives = 23/55 (41%)
Frame = +3
Query: 528 PNVIMFVGLQGSGKTTTCTKLAYHYLRKNWKSCLVCADTFRAGAYDQVQQNCTKA 692
PNVI+ VGL GKT KL YL+ W F G Y + N A
Sbjct: 29 PNVIVMVGLPARGKTYISKKLC-RYLK--WTG--FTTKVFNVGEYRRSDANAADA 78
>Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical
protein F43G6.1b protein.
Length = 1069
Score = 27.9 bits (59), Expect = 7.7
Identities = 33/116 (28%), Positives = 49/116 (42%)
Frame = +3
Query: 342 LLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVK 521
LL+ D + ++N+ ++ I D A G N I+ + K KL + K
Sbjct: 607 LLQNDEIGKRLRNILVDLLPPIIMD--ATGFNLTPAIKKIIIK--AKLNNEQRKAVVHAL 662
Query: 522 GKPNVIMFVGLQGSGKTTTCTKLAYHYLRKNWKSCLVCADTFRAGAYDQVQQNCTK 689
+ +M GL GSGKTT + L + N K L+ A F A D + TK
Sbjct: 663 ATEDFMMVEGLPGSGKTTLISVLIQCLVATN-KKVLLAA--FTHSAVDNILTKLTK 715
>Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical
protein F43G6.1a protein.
Length = 1105
Score = 27.9 bits (59), Expect = 7.7
Identities = 33/116 (28%), Positives = 49/116 (42%)
Frame = +3
Query: 342 LLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVK 521
LL+ D + ++N+ ++ I D A G N I+ + K KL + K
Sbjct: 643 LLQNDEIGKRLRNILVDLLPPIIMD--ATGFNLTPAIKKIIIK--AKLNNEQRKAVVHAL 698
Query: 522 GKPNVIMFVGLQGSGKTTTCTKLAYHYLRKNWKSCLVCADTFRAGAYDQVQQNCTK 689
+ +M GL GSGKTT + L + N K L+ A F A D + TK
Sbjct: 699 ATEDFMMVEGLPGSGKTTLISVLIQCLVATN-KKVLLAA--FTHSAVDNILTKLTK 751
>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
nonsense-mediated mRNA decay trans-acting factor
protein.
Length = 1069
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 549 GLQGSGKTTTCTKLAYHYLRKNWKSCLVCA 638
G G+GKT + YH ++K + LVC+
Sbjct: 467 GPPGTGKTVVSATIVYHLVQKTEGNVLVCS 496
>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 2 protein.
Length = 1069
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 549 GLQGSGKTTTCTKLAYHYLRKNWKSCLVCA 638
G G+GKT + YH ++K + LVC+
Sbjct: 467 GPPGTGKTVVSATIVYHLVQKTEGNVLVCS 496
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,299,512
Number of Sequences: 27780
Number of extensions: 339631
Number of successful extensions: 741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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