Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29m18
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         37   0.002
SPCC1442.14c |||adenosine 5'-monophosphoramidase|Schizosaccharom...    29   0.60 
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    26   3.2  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    25   7.3  
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c...    25   7.3  

>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = +2

Query: 2   VLVIPRKPIPQLSLADDTDEQLLGHLLIVARKVAAQLG--LDKTGFRLVVNDGKNGAQSV 175
           VLVIP++ +P+L    D     L  L    RKV   +      +   + + DG +  Q+V
Sbjct: 37  VLVIPQRAVPRLK---DLTPSELTDLFTSVRKVQQVIEKVFSASASNIGIQDGVDAGQTV 93

Query: 176 YHLHIHILGGRQMQWPPG*IIVYSNLK 256
            H+H+HI+  ++  +     +VYS L+
Sbjct: 94  PHVHVHIIPRKKADFSEN-DLVYSELE 119


>SPCC1442.14c |||adenosine
           5'-monophosphoramidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 133

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 16/65 (24%), Positives = 35/65 (53%)
 Frame = +2

Query: 5   LVIPRKPIPQLSLADDTDEQLLGHLLIVARKVAAQLGLDKTGFRLVVNDGKNGAQSVYHL 184
           LVIP++   ++    +  ++    +L + +KV   +G +   + ++ N+G+   Q V H+
Sbjct: 39  LVIPKEHAAKMH---ELSDESCADILPLVKKVTKAIGPEN--YNVLQNNGRIAHQFVDHV 93

Query: 185 HIHIL 199
           H HI+
Sbjct: 94  HFHII 98


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 86  VARKVAAQLGLDKTGFRLVVNDGKNGAQSVYHLHIHIL 199
           V  +V  Q  +DK   ++ V+       S YHLH+HIL
Sbjct: 215 VLTEVPKQFSVDKNQLKMFVHY----LPSYYHLHVHIL 248


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = +2

Query: 26  IPQLSLADDTDEQLLGHLLIVARKVAAQLGLDKTGFRLVVNDGKNGAQSVYHLHIHILGG 205
           +P ++LA   +E++L        KV     L K    +  ND           +IH LG 
Sbjct: 330 LPVMALAPQPNERILDMSSAPGGKVTYVAALQKNTGIIFANDSNKARTKALSANIHRLGV 389

Query: 206 R 208
           R
Sbjct: 390 R 390


>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 534 YKFFFKTKRICLSGDTSNTSK 472
           YKF FKT R+ LS    +++K
Sbjct: 90  YKFIFKTARLLLSSTYGSSAK 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,577
Number of Sequences: 5004
Number of extensions: 34093
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)