Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29m18
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438...    45   5e-05
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743...    40   0.002
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    33   0.11 
04_03_0594 - 17733827-17735085,17735576-17735642,17736379-177364...    29   1.8  

>03_02_0838 +
           11641484-11642030,11643614-11643650,11643784-11643841,
           11646176-11646265,11646796-11646913,11648093-11648277,
           11648330-11648455,11648578-11648634,11648741-11648821,
           11649068-11649102,11649265-11649354,11649443-11649599,
           11649785-11649901
          Length = 565

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 23/57 (40%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
 Frame = +2

Query: 2   VLVIPRKP--IPQLSLADDTDEQLLGHLLIVARKVAAQLGLDKTGFRLVVNDGKNGA 166
           +++IP+    +  LS A++   ++LG+LL VA+ VA Q GL+  G+R+V+NDG +G+
Sbjct: 229 IVIIPKVKDGLTGLSKAEERHVEILGYLLYVAKVVAKQEGLE-DGYRIVINDGPSGS 284


>06_03_1059 +
           27273267-27273316,27274077-27274163,27274245-27274392,
           27274615-27274732,27274798-27274859
          Length = 154

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
 Frame = +2

Query: 2   VLVIP--RKPIPQLSLADDTDEQLLGHLLIVARKVAAQLGLDKTGFRLVVNDGKNGAQSV 175
           VLVIP  R  +  L  A+    ++LG+LL  A+ VA + G+ + G+R+V+N   NG + +
Sbjct: 80  VLVIPKIRDGLTGLDKAEPRHVEILGYLLYAAKIVAEKEGIAE-GYRVVIN---NGPKGL 135

Query: 176 YHLHI 190
           Y LHI
Sbjct: 136 YMLHI 140


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +2

Query: 5   LVIPRKPIPQLSLADDTD-EQLLGHLLIVARKVAAQLGLDKTGFRLVVNDGKNGAQSVYH 181
           L+IP++  P L     +    +   L +++  +      D   F ++VN+GK   Q ++H
Sbjct: 109 LIIPKRHFPSLQATPPSVIAAICCKLPLISSAIVKATQCD--AFNVLVNNGKVAGQVIFH 166

Query: 182 LHIHILGGRQ 211
            H+H++  R+
Sbjct: 167 THVHLIPRRK 176


>04_03_0594 -
           17733827-17735085,17735576-17735642,17736379-17736413,
           17736810-17737665
          Length = 738

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 98  VAAQLGLDKTGFRLVVNDGKNGAQSVYHLHIHILG 202
           +A Q G   TGF+L  ND  NG  ++   ++ +LG
Sbjct: 27  IAGQPGCAMTGFKLSCNDTGNGVPTLLLRNVEVLG 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,042,332
Number of Sequences: 37544
Number of extensions: 230091
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)