Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29m18
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical pr...   101   3e-22
AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical...    48   4e-06
AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and...    48   4e-06
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    28   5.1  

>Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical
           protein F21C3.3 protein.
          Length = 130

 Score =  101 bits (242), Expect = 3e-22
 Identities = 45/75 (60%), Positives = 60/75 (80%)
 Frame = +2

Query: 5   LVIPRKPIPQLSLADDTDEQLLGHLLIVARKVAAQLGLDKTGFRLVVNDGKNGAQSVYHL 184
           LVIP++ I  L  A D+D  L+G L++ A KVA QLG+   G+R+VVN+GK+GAQSV+HL
Sbjct: 57  LVIPKRRIDMLENAVDSDAALIGKLMVTASKVAKQLGM-ANGYRVVVNNGKDGAQSVFHL 115

Query: 185 HIHILGGRQMQWPPG 229
           H+H+LGGRQ+QWPPG
Sbjct: 116 HLHVLGGRQLQWPPG 130


>AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical
           protein Y56A3A.13 protein.
          Length = 440

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
 Frame = +2

Query: 2   VLVIPRKPIPQLSLADDTDEQLLGHLLIVARKVAAQLGL--DKTGFRLVVNDGKNGAQSV 175
           VLV P++ +P+L+  D TD +    L IVA+KV A L    + T   + V DGK+  Q+V
Sbjct: 332 VLVSPKRVVPRLT--DLTDAET-ADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTV 388

Query: 176 YHLHIHILGGR 208
            H+HIHIL  R
Sbjct: 389 PHVHIHILPRR 399


>AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and
           fragile histidinetriad fusion protein NitFhit protein.
          Length = 440

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
 Frame = +2

Query: 2   VLVIPRKPIPQLSLADDTDEQLLGHLLIVARKVAAQLGL--DKTGFRLVVNDGKNGAQSV 175
           VLV P++ +P+L+  D TD +    L IVA+KV A L    + T   + V DGK+  Q+V
Sbjct: 332 VLVSPKRVVPRLT--DLTDAET-ADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTV 388

Query: 176 YHLHIHILGGR 208
            H+HIHIL  R
Sbjct: 389 PHVHIHILPRR 399


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 26   IPQLSLADDTDEQLLGHLLIVARKVAAQL 112
            +PQL + +DTDE  L  LL+   K AA +
Sbjct: 1123 LPQLDVDEDTDEYRLRRLLLFGLKPAANV 1151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,192,535
Number of Sequences: 27780
Number of extensions: 196456
Number of successful extensions: 462
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)