Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29m17
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical pr...    34   0.11 
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    33   0.15 
U70856-2|AAB09164.1|  461|Caenorhabditis elegans Hypothetical pr...    31   0.59 
AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical ...    30   1.4  
AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z83223-6|CAB05719.1|  884|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81538-6|CAB04387.1|  884|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z77668-1|CAB01239.1|  576|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical ...    28   7.3  
AF016424-8|AAB65328.2|  467|Caenorhabditis elegans Hypothetical ...    27   9.6  

>U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical
           protein C32E8.3 protein.
          Length = 180

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +3

Query: 588 DKWMKQAKVIDGKKITTTDTAIHFKK 665
           DKW+K A V+D K IT T T I F K
Sbjct: 38  DKWLKDAGVLDNKAITGTMTGIAFSK 63


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 472 MERPVKARITPYLSRK-PSRRFPNLEIPSP 558
           +ERPV AR TPY+ R  P+R  P +E P P
Sbjct: 174 IERPVPARPTPYIERPVPARPAPYIERPEP 203



 Score = 33.1 bits (72), Expect = 0.19
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
 Frame = +1

Query: 472 MERPVKARITPYLSRKPSRRFPNLE----IPSPMEKPSRSRKATNG*SKPKSLMERK*QQ 639
           +ERPV AR  PY+   P+R  P +E     P P  +P R+R      +  +  +E   Q+
Sbjct: 210 IERPVPARPAPYIEPTPARPAPYIEPSTAKPQPRPQPPRTRPYVAPSTTTQRYIEPTTQR 269

Query: 640 -RTRPFTSKKL 669
             TR  T+K++
Sbjct: 270 PTTRRATTKRI 280



 Score = 32.3 bits (70), Expect = 0.34
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = +1

Query: 472 MERPVKARITPYLSR-KPSRRFPNLE-----IPSPMEKPSRSRKATNG*SKPKSLMERK* 633
           +ERPV AR  PY+ R +P+R  P +E      P+P  +P+ +R A            R  
Sbjct: 186 IERPVPARPAPYIERPEPARPAPYIERPVPARPAPYIEPTPARPAPYIEPSTAKPQPRPQ 245

Query: 634 QQRTRPFTS 660
             RTRP+ +
Sbjct: 246 PPRTRPYVA 254


>U70856-2|AAB09164.1|  461|Caenorhabditis elegans Hypothetical
           protein F57F4.1 protein.
          Length = 461

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 539 FGKRLEGFLER*GVILAFTGRSIGCSRRVPVLKLDVLDF 423
           +GK   GFL R  + LA+T   + C  RV V  +D ++F
Sbjct: 321 YGKIFGGFLMRKALELAYTNAKLYCKGRVAVRSMDHIEF 359


>AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical
           protein T07D3.9a protein.
          Length = 441

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = -2

Query: 539 FGKRLEGFLER*GVILAFTGRSIGCSRRVPVLKLDVLDF-----LCHLLH 405
           +GK   GFL R  + LA T   + C  RV +  +D ++F     + H+LH
Sbjct: 301 YGKIFGGFLMRKALELAHTNAKLYCKGRVAIRSMDQIEFQKPVEIGHVLH 350


>AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical
           protein T07D3.9b protein.
          Length = 422

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = -2

Query: 539 FGKRLEGFLER*GVILAFTGRSIGCSRRVPVLKLDVLDF-----LCHLLH 405
           +GK   GFL R  + LA T   + C  RV +  +D ++F     + H+LH
Sbjct: 256 YGKIFGGFLMRKALELAHTNAKLYCKGRVAIRSMDQIEFQKPVEIGHVLH 305


>Z83223-6|CAB05719.1|  884|Caenorhabditis elegans Hypothetical
           protein E01G4.6 protein.
          Length = 884

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = +3

Query: 393 TDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNALXXXXXXXXXXXXGDPKSDGKAI 572
           T  AVE+ T+EV +   E   AP A+   SS+   N +               K   K +
Sbjct: 308 TTKAVEEATEEVTEEATEATEAPVATTKESSEMHVNTI------RNMIRSASEKDLSKYV 361

Query: 573 TLSQSDKWMKQAKVIDGKKITTT 641
           TL    K+ +  ++ + KK+T T
Sbjct: 362 TLISEGKFSELFELAEQKKLTLT 384


>Z81538-6|CAB04387.1|  884|Caenorhabditis elegans Hypothetical
           protein E01G4.6 protein.
          Length = 884

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = +3

Query: 393 TDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNALXXXXXXXXXXXXGDPKSDGKAI 572
           T  AVE+ T+EV +   E   AP A+   SS+   N +               K   K +
Sbjct: 308 TTKAVEEATEEVTEEATEATEAPVATTKESSEMHVNTI------RNMIRSASEKDLSKYV 361

Query: 573 TLSQSDKWMKQAKVIDGKKITTT 641
           TL    K+ +  ++ + KK+T T
Sbjct: 362 TLISEGKFSELFELAEQKKLTLT 384


>Z77668-1|CAB01239.1|  576|Caenorhabditis elegans Hypothetical
           protein R11G10.2 protein.
          Length = 576

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 116 VKSLSFQVFNGILLIARFFLHNARCNN 36
           ++S++    +G L+I   FLHNA CN+
Sbjct: 303 IQSINLDTCDGSLVICVKFLHNADCNH 329


>AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical
           protein E01A2.2a protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 21/96 (21%), Positives = 39/96 (40%)
 Frame = +3

Query: 369 KMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNALXXXXXXXXXXXXGD 548
           K S +  + +A +  +   V  VKLENG         + K ED +L              
Sbjct: 170 KFSLDFGDAEAIIRMLDSVV--VKLENGTEDELKAVLAQKLEDESLADIKKDENGNGTEQ 227

Query: 549 PKSDGKAITLSQSDKWMKQAKVIDGKKITTTDTAIH 656
           PK + +    S + + +++  + DG + ++    IH
Sbjct: 228 PKEEPEVKQESGATEELEEGAIEDGTEKSSNKVNIH 263


>AF016424-8|AAB65328.2|  467|Caenorhabditis elegans Hypothetical
           protein F39G3.2 protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 484 VKARITPYLSRKPSRRFPNLEIPS 555
           ++ R  P   R P+R FPNL++PS
Sbjct: 223 LRLRPWPSFGRLPTRLFPNLKLPS 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,047,316
Number of Sequences: 27780
Number of extensions: 298313
Number of successful extensions: 851
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)