Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29m15
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    50   3e-07
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.3  
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch...    26   5.8  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    26   5.8  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   5.8  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    25   7.7  

>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 6/167 (3%)
 Frame = +1

Query: 82  YLSITDILVTTEKVPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPL 261
           Y  I  IL   +KVPC     +P +G          +  G  VE+P WLAE L       
Sbjct: 3   YYDIDSILSENQKVPCTSTVSIPGLGHEGRM-----VPTGSKVELPFWLAEVLAIN--SF 55

Query: 262 VSVELPKIYKESYREILNADACAVDLHKLGQHFYELGCYVAKHDIKSEVAATLN-NTYRQ 438
           VS+ +P  +    R  L A+  +V +  +  H+Y     +  H I  +    ++ NT R 
Sbjct: 56  VSIHMPAPFSSVVRNALKANPNSVSIRDITTHYYHFAEKML-HLISDDSLVQISLNTLRS 114

Query: 439 RFRMLLAASMS-----SDSINTMQPLSASERIQAADASNTERSFLTW 564
           R  ++  AS++       +   ++ L   E+     + N  RS + W
Sbjct: 115 RAMLIADASLNPQGALQQNSQFIEGLDDFEKHILRVSHNAHRSLINW 161


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 232  ESLYSRRPPL-VSVELPKIYKESYREILNADACAVDLHKLGQHF 360
            E+   + PPL ++V    ++ +SYR +   DA  V   KL  HF
Sbjct: 2861 EAAKEQYPPLNITVRRDHVFLDSYRALHFKDADEVKFSKLNIHF 2904


>SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 141

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 499 LSASERIQAADASNTERSFLTWLQRGD 579
           ++ASE++    A +  R F+TWL+  D
Sbjct: 1   MNASEKLSQKAAQSVTRRFITWLKSPD 27


>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
           Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +1

Query: 259 LVSVELPKIYK-ESYREILNADACAVDLHKLGQHFYELGCYVAKHDIKSEVAATLNNT 429
           +  V LP++ +  +  + LN +A A+ L +   ++ ++  Y+A++  K +   TLN++
Sbjct: 102 IFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVRDYIARYANKEDADITLNDS 159


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
 Frame = +1

Query: 22  LKINNRIFPKQKQ------MSTENSGYLSITD-ILVTTEKVPCKFLHDLPKMGFLDPSAA 180
           LK+ N + P+ +        +   + Y+S TD  L+  +      +  + K+ F  P   
Sbjct: 204 LKLFNEVIPRLRHGNDGLIFTCTETPYVSGTDQSLLKWKPKEMNTIDFMLKLEFAQPEEG 263

Query: 181 DVDLKAGCSVEIPLWLAESLYS 246
           D+D  A    ++ +W   ++YS
Sbjct: 264 DIDYSAMPEFQLGVWEGRNMYS 285


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 16  QNLKINNRIFPKQKQMST-ENSGYLSITDILVTTEKVPC 129
           Q  ++ N +   +K +S  +NS ++S+  I+ T  K PC
Sbjct: 767 QRTRLLNLLIIHEKLLSDKDNSAHISLRKIIYTLMKTPC 805


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 76  SGYLSITDILVTTEKVPCKFL 138
           SGYLS+  +L T  + P K+L
Sbjct: 393 SGYLSLLPLLFTLNEAPIKYL 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,868
Number of Sequences: 5004
Number of extensions: 52775
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)