Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29m15
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1043 + 10565632-10565676,10565755-10565826,10566186-105662... 84 9e-17
07_03_1436 - 26543846-26546806 34 0.12
02_03_0080 + 14935664-14935796,14943858-14944175,14944352-149451... 34 0.12
10_08_1024 + 22371260-22371481,22371514-22372188,22372291-223732... 33 0.28
04_03_0069 - 10665455-10666902,10669889-10670138 33 0.28
01_05_0256 - 19994072-19995268 32 0.37
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 30 1.5
10_03_0002 - 6858257-6861205 29 2.6
05_04_0037 - 17399402-17400934 29 2.6
03_05_0024 - 19934529-19935298,19935359-19935871,19936147-199366... 28 7.9
>08_01_1043 +
10565632-10565676,10565755-10565826,10566186-10566289,
10566482-10566574,10571044-10571183,10571297-10571427
Length = 194
Score = 84.2 bits (199), Expect = 9e-17
Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 3/186 (1%)
Frame = +1
Query: 79 GYLSITDILVTTEKVPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPP 258
GY I DIL+ E + F +G LDP A ++ G V++P WLA L S
Sbjct: 3 GYYDIDDILMEEEPISVVFQVSANGVGLLDPGAERNSVEKGAKVDLPFWLAHGLLSLE-Q 61
Query: 259 LVSVELPKIYKESYREILNADACAVDLHKLGQHFYELGCYVAKHDIKSEVAATLNNTYRQ 438
VS+ +P + + R+ + ADA VDL +FYELGC + + L +
Sbjct: 62 AVSINVPPCFTQKTRKEIQADAACVDLRIRCPYFYELGCKIVPLVNDRSIGLFLRYAFTS 121
Query: 439 RFRMLLAASMSSD--SINTMQPLSASERIQAAD-ASNTERSFLTWLQRGDTPLTTANMVA 609
R++ +L+ S SS ++ P E Q + A ++ +F W + G L A+++
Sbjct: 122 RYKEILSKSHSSSMMTVPKFVPRLTKEEAQVFESARDSMTAFKKW-RAGGVRLQKASILG 180
Query: 610 NHRKRK 627
RK K
Sbjct: 181 RKRKTK 186
>07_03_1436 - 26543846-26546806
Length = 986
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 505 ASERIQAADA-SNTERSFLTWLQRGDTPLTTANMVANHRKRKRAEMEML*T 654
A+E +A DA + +++S TW + DTP T + NH+ RKR E++ T
Sbjct: 592 ANEYAKAEDAITASKQSGTTWKPKKDTPTTGGSGSNNHKDRKRKPEELVAT 642
>02_03_0080 +
14935664-14935796,14943858-14944175,14944352-14945199,
14945249-14945521
Length = 523
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 505 ASERIQAADA-SNTERSFLTWLQRGDTPLTTANMVANHRKRKRAEMEML*T 654
AS+ QA D + +++S TW + DTP T + NH+ RKR E++ T
Sbjct: 151 ASQDGQAEDVITASKQSGTTWKPKKDTPTTGGSGSTNHKDRKRKPKELVAT 201
>10_08_1024 +
22371260-22371481,22371514-22372188,22372291-22373236,
22389377-22389552
Length = 672
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 505 ASERIQAADA-SNTERSFLTWLQRGDTPLTTANMVANHRKRKRAEMEML*T 654
A+E +A DA + +++S TW + DTP + NH+ RKR E++ T
Sbjct: 376 ANEYTKAEDAITASKQSGTTWKPKNDTPTAGGSGSNNHKDRKRKPEELVAT 426
>04_03_0069 - 10665455-10666902,10669889-10670138
Length = 565
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 505 ASERIQAADA-SNTERSFLTWLQRGDTPLTTANMVANHRKRKRAEMEML*T 654
A+E +A DA + +++S TW + DTP + NH+ RKR E++ T
Sbjct: 171 ANEYAKAEDAITASKQSGTTWKPKKDTPAVGGSRSNNHKDRKRKPEELVAT 221
>01_05_0256 - 19994072-19995268
Length = 398
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 505 ASERIQAADA-SNTERSFLTWLQRGDTPLTTANMVANHRKRKRAEMEML*TFEH 663
A+E +A DA + +++S +W + DTP T NH+ RKR E++ T H
Sbjct: 5 ANEYAKAEDAVTASKQSGPSWKPKKDTPATGGGGSNNHKDRKRKPEELVATAIH 58
>09_04_0695 -
19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 526 ADASNTERSFLTWLQRGDTPLTTANMVANHRKRK 627
A + +RS LTWL+ GD ++ AN R+RK
Sbjct: 721 AKSKKRQRSRLTWLKEGDANTKFFHIHANSRRRK 754
>10_03_0002 - 6858257-6861205
Length = 982
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 505 ASERIQAADA-SNTERSFLTWLQRGDTPLTTANMVANHRKRKRAEMEML*TFEH 663
A+E +A DA + +++S +W TP T NH+ RKR E++ T H
Sbjct: 589 ANEYAKAEDAVTASKQSGPSWKPNKGTPATGGGGSNNHKDRKRKPEELVATATH 642
>05_04_0037 - 17399402-17400934
Length = 510
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 505 ASERIQAADA-SNTERSFLTWLQRGDTPLTTANMVANHRKRKRAEMEML*TFEH 663
A+E +A DA + +++S +W TP T NH+ RKR E++ T H
Sbjct: 117 ANEYAKAEDAVTASKQSGPSWKPNKGTPATGGGGSNNHKDRKRKPEELVATATH 170
>03_05_0024 -
19934529-19935298,19935359-19935871,19936147-19936635,
19936738-19937044,19937104-19937130
Length = 701
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 505 ASERIQAADASNT-ERSFLTWLQRGDTPLTTANMVANHRKRKRAEMEML 648
A++ +A DA N ++S W + DTP + NH+ RKR +++
Sbjct: 327 ANDYAKADDAVNAYKQSSGNWKSKKDTPAAGGSGSNNHKDRKRKPEDLV 375
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,404,895
Number of Sequences: 37544
Number of extensions: 310441
Number of successful extensions: 682
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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