Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29m13
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 34 0.024
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 30 0.30
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 29 0.52
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 2.8
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 27 2.8
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 3.7
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 26 4.8
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 4.8
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 33.9 bits (74), Expect = 0.024
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +3
Query: 267 RGLEKKLRDMDAEERRKIHEKEASIKTAQEKAKLKA--MAKEQXXXXXXXXXXXXXTGTA 440
R E+K R ++AEE K +E + + A+EKAK +A AK + A
Sbjct: 547 RKAEEKAR-LEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREA 605
Query: 441 ESKDAIKSDKKPEMQAGSQQVKKVEAKPQQQPAKK 545
E K ++++K + +A + ++ E K +++ +K
Sbjct: 606 EEKAKREAEEKAKREAEEKAKREAEEKAKREAEEK 640
Score = 31.1 bits (67), Expect = 0.17
Identities = 23/99 (23%), Positives = 47/99 (47%)
Frame = +3
Query: 267 RGLEKKLRDMDAEERRKIHEKEASIKTAQEKAKLKAMAKEQXXXXXXXXXXXXXTGTAES 446
R E+K + +AEE+ K +E + + A+EKAK +A K + E+
Sbjct: 611 REAEEKAK-REAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREA 669
Query: 447 KDAIKSDKKPEMQAGSQQVKKVEAKPQQQPAKKVDTNVK 563
++ K+ ++ E A + +KV+ + ++ +K + K
Sbjct: 670 EE--KAKREAEENAKREAEEKVKRETEENAKRKAEEEGK 706
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 30.3 bits (65), Expect = 0.30
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Frame = +3
Query: 267 RGLEKKLRDMDA---EERRKIHEKEASIKTAQEKAKLKAMAKEQ 389
R EKK ++++ EE++K E+E +K Q++A + MA+EQ
Sbjct: 648 REQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQ 691
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 29.5 bits (63), Expect = 0.52
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +3
Query: 180 APPMTLNFFHGKVGQNLEGIVSKTVDSFIRGLEKKLRDMDAEERRKIHEKEASIKTAQEK 359
A P T + H N+ G+ S ++ I+ + ++ D + + H+K + +T EK
Sbjct: 36 AYPSTTHDPHQNDDSNIPGLGSGLLER-IKDIVQRPTDTQLKGQDSNHKKASLTETKTEK 94
Query: 360 AKLKAMAKEQ 389
AK+K AK++
Sbjct: 95 AKVKPKAKKK 104
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/48 (25%), Positives = 30/48 (62%)
Frame = +3
Query: 222 QNLEGIVSKTVDSFIRGLEKKLRDMDAEERRKIHEKEASIKTAQEKAK 365
+N++ +VS+ + + E+K + +A+ +K+ ++E +K +EKA+
Sbjct: 696 RNVDPMVSELSERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKAR 743
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 300 AEERRKIHEKEASIKTAQEKAK 365
A +RR+I +KEA +K+ QE K
Sbjct: 425 ANDRREIRQKEAKLKSEQEMEK 446
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 32 EIIQARKHKKL*FLENG*SNTKSSRFSLGIKQSFKTSYFHCMAIRENRNGTTN 190
EI+ A K + +ENG S S+ S I + ++ Y HC+A+ E++ N
Sbjct: 858 EIVGANKERIQKTVENG-SQLLDSK-SKAIHSNSRSMYDHCLALAESQKQGVN 908
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 26.2 bits (55), Expect = 4.8
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = +3
Query: 330 EASIKTAQEKAKLKAMAKEQXXXXXXXXXXXXXTGTAESKDAIKSDKKPEMQAGSQQVKK 509
E S+ +KA KA AKE+ +SK+A+ +D K + S +K
Sbjct: 67 EKSVNYLLQKASSKAGAKEKQNTDSQKEKKQN-----KSKEAL-ADAKDPLDESSNGIKN 120
Query: 510 VEAKPQQQPAKKVDTNVKM 566
+ +PA + + VKM
Sbjct: 121 LSLNKNDEPAFQTNGEVKM 139
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 249 SWKRFLPSFVPLFREKNSKSL 187
+WK P+FV L +EKNS L
Sbjct: 1336 NWKLGSPAFVTLVKEKNSSCL 1356
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,828
Number of Sequences: 5004
Number of extensions: 41784
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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