Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29m11
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    45   9e-06
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    29   0.87 
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   2.0  
SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces pom...    27   2.6  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    26   4.6  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    26   6.1  

>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 30/96 (31%), Positives = 41/96 (42%)
 Frame = +3

Query: 387 LDSMGCFRDIGVFIDVSSGPGSTPEGLEVTFQVKELSRVIGGINTTVSENEGNLVLGVKM 566
           L +   +    + ID +S   S  + L+VT QVKE  R+     T V   EGN+   V  
Sbjct: 95  LMAFNVYETANIKIDRASSSVSGDDDLDVTIQVKEKPRLYVETGTDVGNVEGNVHANVLA 154

Query: 567 PNIAGRGEKLQAEYSMGYRSTSNFNVTATKPYPHKP 674
            N+ G  E L    S G R+ S  +V    P    P
Sbjct: 155 RNVFGGAELLSGNVSYGTRNRSTMSVNFETPVNADP 190


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 314 ILYNVIFCTIQTINVHSIN-TSSYSI*FDGGFWYWFLAHFDWLF 186
           I+   I   + T N+++ + T+++   F+ G +YW      WLF
Sbjct: 220 IIVGTILLLVATYNIYTYHLTNTHHNGFECGIYYWHFCDVVWLF 263


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 207 RPFRLALQKQTDHRQSRQYRAGLPSRGQCPFWF 109
           RP  LAL+ Q+ HR++    +G   +G    WF
Sbjct: 471 RPNSLALKNQSSHRRNSSTSSGETGKGPKIVWF 503


>SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 207 EEPIPKPTIKLDGVRARVDRVHVD 278
           +EP PK  + +D +  +V R+HVD
Sbjct: 252 QEPKPKKNVDVDIIGNKVGRIHVD 275


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = +3

Query: 489 ELSRVIGGINTTVSENEGNLVL----GVKMPNIAGRGEKLQAEYSMGYRSTSNFNVTATK 656
           EL RVI G+NT + E    +       +    I  RGE++Q    + Y S   F+ T   
Sbjct: 562 ELERVIKGMNTMLLEFPAEMHFYVPEEIHKKLIGFRGEQIQRVTKL-YNSYIEFSTTPFD 620

Query: 657 PYPHKPLV 680
            Y H  L+
Sbjct: 621 CYGHNVLI 628


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 472 TSSPSGVDPGPDDTSMNTPMSRKQPIE 392
           TSS S   P P D S  T ++ KQ IE
Sbjct: 183 TSSKSLSPPAPQDESQGTEINLKQKIE 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,064
Number of Sequences: 5004
Number of extensions: 64253
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)