Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29m07
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    29   0.81 
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    26   4.3  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   10.0 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   10.0 

>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 540  FFGMSHLVSWVSL*YVQD--NSSIPCSPSA-RWRRSHRRY 430
            F G+S +V+W+S  Y+ D  N+ +P SPS+  W R    Y
Sbjct: 1838 FDGISKIVNWIS--YIPDKRNNPVPISPSSDTWDRDVEFY 1875


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 238 VMLKATTIMGSESGAQGCAVVLP*ETYSFVMRPGTFSTSDY 360
           V L + T++ S    QGC V     TYS+  R G F  S Y
Sbjct: 332 VALTSLTVICSFMMGQGCMVAASRVTYSYA-RDGVFPFSKY 371


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 100 KQIPVPMLATISNENYRQIIWILDH 174
           K++ +  + ++  E YR ++WILD+
Sbjct: 535 KKVTLQDMESMDAEYYRSLVWILDN 559


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 21/64 (32%), Positives = 24/64 (37%)
 Frame = -2

Query: 469 QSQCPLASQSQTVQPMHQSTGGQPSLKLDSYGLHCSGNRLLKRSLVASRKNMSPKARPRR 290
           QSQ   AS SQ  QP H    G   L  D               L A+  ++ P   PR 
Sbjct: 3   QSQVATASPSQNAQPNHGM--GSKVLSSDPNASLPPQTAYYASPLHANSVSLPPSHLPRS 60

Query: 289 TLVP 278
           TL P
Sbjct: 61  TLHP 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,897
Number of Sequences: 5004
Number of extensions: 56032
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)