Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29m05
         (570 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF251006-1|AAK28427.1| 1500|Drosophila melanogaster host cell fa...    31   0.83 
BT015268-1|AAT94497.1| 1500|Drosophila melanogaster LD29768p pro...    30   1.9  
AY060983-1|AAL28531.1|  883|Drosophila melanogaster GM14007p pro...    30   1.9  
AJ320236-1|CAC44472.1| 1500|Drosophila melanogaster host cell fa...    30   1.9  
AE014135-74|AAS64608.1| 1500|Drosophila melanogaster CG1710-PD, ...    30   1.9  
AE014135-73|AAN06530.1| 1500|Drosophila melanogaster CG1710-PC, ...    30   1.9  
AE014135-72|AAN06529.1| 1500|Drosophila melanogaster CG1710-PB, ...    30   1.9  
AE014135-71|AAF59349.2| 1500|Drosophila melanogaster CG1710-PA, ...    30   1.9  
X75886-1|CAA53480.1|  621|Drosophila melanogaster nuclear lamin ...    28   7.7  

>AF251006-1|AAK28427.1| 1500|Drosophila melanogaster host cell factor
            HCF protein.
          Length = 1500

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 364  GHDLVVVPGRVVAPSGRRTVALSLKVDISLEPGGVPRSISLA 239
            G+ ++V+PG     S   T ALS K       GG PR+++LA
Sbjct: 932  GNKVMVLPGTSSNNSPATTTALSAKKSFVFNAGGSPRTVTLA 973


>BT015268-1|AAT94497.1| 1500|Drosophila melanogaster LD29768p protein.
          Length = 1500

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 364  GHDLVVVPGRVVAPSGRRTVALSLKVDISLEPGGVPRSISLA 239
            G+ ++V+PG     S   T ALS +       GG PR+++LA
Sbjct: 932  GNKVMVLPGTSSNNSPATTTALSARKSFVFNAGGSPRTVTLA 973


>AY060983-1|AAL28531.1|  883|Drosophila melanogaster GM14007p
           protein.
          Length = 883

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 364 GHDLVVVPGRVVAPSGRRTVALSLKVDISLEPGGVPRSISLA 239
           G+ ++V+PG     S   T ALS +       GG PR+++LA
Sbjct: 315 GNKVMVLPGTSSNNSPATTTALSARKSFVFNAGGSPRTVTLA 356


>AJ320236-1|CAC44472.1| 1500|Drosophila melanogaster host cell factor
            protein.
          Length = 1500

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 364  GHDLVVVPGRVVAPSGRRTVALSLKVDISLEPGGVPRSISLA 239
            G+ ++V+PG     S   T ALS +       GG PR+++LA
Sbjct: 932  GNKVMVLPGTSSNNSPATTTALSARKSFVFNAGGSPRTVTLA 973


>AE014135-74|AAS64608.1| 1500|Drosophila melanogaster CG1710-PD,
            isoform D protein.
          Length = 1500

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 364  GHDLVVVPGRVVAPSGRRTVALSLKVDISLEPGGVPRSISLA 239
            G+ ++V+PG     S   T ALS +       GG PR+++LA
Sbjct: 932  GNKVMVLPGTSSNNSPATTTALSARKSFVFNAGGSPRTVTLA 973


>AE014135-73|AAN06530.1| 1500|Drosophila melanogaster CG1710-PC,
            isoform C protein.
          Length = 1500

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 364  GHDLVVVPGRVVAPSGRRTVALSLKVDISLEPGGVPRSISLA 239
            G+ ++V+PG     S   T ALS +       GG PR+++LA
Sbjct: 932  GNKVMVLPGTSSNNSPATTTALSARKSFVFNAGGSPRTVTLA 973


>AE014135-72|AAN06529.1| 1500|Drosophila melanogaster CG1710-PB,
            isoform B protein.
          Length = 1500

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 364  GHDLVVVPGRVVAPSGRRTVALSLKVDISLEPGGVPRSISLA 239
            G+ ++V+PG     S   T ALS +       GG PR+++LA
Sbjct: 932  GNKVMVLPGTSSNNSPATTTALSARKSFVFNAGGSPRTVTLA 973


>AE014135-71|AAF59349.2| 1500|Drosophila melanogaster CG1710-PA,
            isoform A protein.
          Length = 1500

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 364  GHDLVVVPGRVVAPSGRRTVALSLKVDISLEPGGVPRSISLA 239
            G+ ++V+PG     S   T ALS +       GG PR+++LA
Sbjct: 932  GNKVMVLPGTSSNNSPATTTALSARKSFVFNAGGSPRTVTLA 973


>X75886-1|CAA53480.1|  621|Drosophila melanogaster nuclear lamin C
           protein protein.
          Length = 621

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 323 RRNHTAGHHDKIMAAKKKPDDEQKDKGLENAR 418
           R N   G +++ +A +KK +D+ K+  LEN R
Sbjct: 155 RYNEVNGKYNQALADRKKFEDQAKELALENER 186


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,744,898
Number of Sequences: 53049
Number of extensions: 348232
Number of successful extensions: 1543
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2234671092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)