Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29m05
(570 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006712-10|AAK39322.2| 273|Caenorhabditis elegans Hypothetical... 30 1.3
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 28 4.1
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 28 4.1
U70856-1|AAB09165.1| 327|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z71181-3|CAA94896.1| 493|Caenorhabditis elegans Hypothetical pr... 28 5.4
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 5.4
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 5.4
Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical p... 27 7.2
Z99277-6|CAB16484.1| 677|Caenorhabditis elegans Hypothetical pr... 27 9.5
AF016683-7|AAM97999.1| 609|Caenorhabditis elegans Hypothetical ... 27 9.5
>AC006712-10|AAK39322.2| 273|Caenorhabditis elegans Hypothetical
protein Y119C1B.1 protein.
Length = 273
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = +2
Query: 230 RKRSETDAPRYTARLKTYVDFQRKRDRATAARRNHTAGHHDKIMAAKKKPDDEQKDK 400
R+RS +++ + +K+ + KRDR T+ R ++ +K+ K ++K +
Sbjct: 39 RRRSSSNSKKSKKSMKSRKSMKSKRDRRTSERERKSSRDRNKVSRRSMKSSRDRKSR 95
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +2
Query: 230 RKRSETDAPRYTARLKTYVDFQRKRDRATAARRNHTAGHHDKIMAAKKKPDDEQKDKGLE 409
RKRS + + +R + D RKR R+ RR + K ++ + D ++DK
Sbjct: 322 RKRSRSRDRKRRSRSRDNKDRDRKRSRS-RDRRRRSKSRDRKRERSRSRSKDRKRDKKRS 380
Query: 410 NARDGDK 430
+R +K
Sbjct: 381 RSRSPEK 387
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +2
Query: 230 RKRSETDAPRYTARLKTYVDFQRKRDRATAARRNHTAGHHDKIMAAKKKPDDEQKDKGLE 409
RKRS + + +R + D RKR R+ RR + K ++ + D ++DK
Sbjct: 322 RKRSRSRDRKRRSRSRDNKDRDRKRSRS-RDRRRRSKSRDRKRERSRSRSKDRKRDKKRS 380
Query: 410 NARDGDK 430
+R +K
Sbjct: 381 RSRSPEK 387
>U70856-1|AAB09165.1| 327|Caenorhabditis elegans Hypothetical
protein F57F4.2 protein.
Length = 327
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +2
Query: 341 GHHDKIMAAKKKPDDEQKDKGLENARDGDKCXXXXXXXXXXXGEPLDR 484
G K+ AKK DD Q+ KG +RDGD+ G PL R
Sbjct: 89 GGPGKLYRAKK--DDGQEKKGDPQSRDGDEGEEEGSDKKEKKGNPLKR 134
>Z71181-3|CAA94896.1| 493|Caenorhabditis elegans Hypothetical
protein K07C5.3 protein.
Length = 493
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 287 DFQRKRDRATAARRNHTAGHHDKIMAAKKKPDDEQKDKGLENAR-DGDK 430
DF++ + T++ +N A K +++ DDE+ D + N+ +GD+
Sbjct: 354 DFEKSAQQKTSSSKNKVAEPSFKKSKRQEESDDEESDVEMSNSESEGDQ 402
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 253 SSVHRQAQDLCRLSEKARPCDGRSAQPH 336
S +H Q +D+ + ++ P D +S QPH
Sbjct: 3972 SPIHSQKEDISQFQNESSPEDVKSEQPH 3999
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 253 SSVHRQAQDLCRLSEKARPCDGRSAQPH 336
S +H Q +D+ + ++ P D +S QPH
Sbjct: 3972 SPIHSQKEDISQFQNESSPEDVKSEQPH 3999
>Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical
protein Y57G11C.20 protein.
Length = 649
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 293 QRKRDRATAARRNHTAGHHDKIMAAKKKPDDEQKDKGLENARDGDK 430
+++R + A R H A H KKK + E+K K + R K
Sbjct: 221 EKRRAKEKADRDAHVARHKQAEALEKKKREQEEKQKNEDRERATQK 266
>Z99277-6|CAB16484.1| 677|Caenorhabditis elegans Hypothetical
protein Y53C12A.1 protein.
Length = 677
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 242 ETDAPRYTARLKTYVDFQRKRDRATAARRNHTAGHHDKIMAA 367
+ D P R+ +D KR +ARRN T H ++ A+
Sbjct: 502 QLDEPESPPRMNDVIDKLGKRGTPRSARRNLTFNRHRQVAAS 543
>AF016683-7|AAM97999.1| 609|Caenorhabditis elegans Hypothetical
protein K09F6.9 protein.
Length = 609
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 305 DRATAARRNHTAGHHDKIMAAKKKPDDEQKDKGLENARDGDK 430
+RAT R H H + ++ E KDK E AR+ DK
Sbjct: 383 ERATQKEREHIERHREAQERHERLQALEAKDKEDERAREEDK 424
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,223,500
Number of Sequences: 27780
Number of extensions: 165055
Number of successful extensions: 513
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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