Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29m04
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0123 - 20997498-20997512,20998015-20998100,20999066-209991...    32   0.46 
06_01_0583 - 4174037-4174114,4174215-4174352,4174447-4174555,417...    31   0.81 
04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581     29   4.3  
12_02_0287 - 16851369-16851998                                         28   7.5  
12_02_0286 - 16845594-16846223                                         28   7.5  
04_04_0848 - 28677545-28677635,28677760-28677887,28678020-286781...    28   7.5  
04_04_1578 + 34569091-34569966                                         27   9.9  
02_02_0691 + 12999452-12999820                                         27   9.9  
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331...    27   9.9  

>09_06_0123 -
           20997498-20997512,20998015-20998100,20999066-20999198,
           20999264-20999341,21000130-21000216,21001164-21001254,
           21001338-21001488,21001567-21002296,21002404-21002820
          Length = 595

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 334 IQQAENNSGHRLSQECFLPEAMVHPGDTVVSGA*GPTQESPPPAST 197
           ++   + S    S++  +P    HP    +SG   PT   PPP +T
Sbjct: 127 LKSLSDGSAPSASEDLIVPSVQPHPVANPISGGSNPTSSPPPPNAT 172


>06_01_0583 -
           4174037-4174114,4174215-4174352,4174447-4174555,
           4174857-4174945,4175218-4175307,4175570-4175653,
           4177508-4177759
          Length = 279

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 183 YPLLKVDAGGGDSCVGPQAPLTTVSPGWTIASGRKH-SWLNRWPELFSACW 332
           Y  LK D+GGG     P  P+  +  G   AS R+   WL +     S+ W
Sbjct: 122 YTPLKEDSGGGSESATPPTPIEPIHDGKIRASSREQIKWLEQSIAATSSNW 172


>04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581
          Length = 521

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +3

Query: 201 DAGGGDSCVGPQAPLTTVSPGWTIASGRKHSWLNRWPELFSACWMTFILLGISLLVFYA- 377
           D   GD C G  A   T   GW  ASGR  S ++ W      C   +  +G+   +F+A 
Sbjct: 76  DGRCGDRCAGAGAAAGT---GWEWASGRASSTVSEWG---LVCGERY-KVGLVQAIFFAG 128

Query: 378 --IGISVYRH 401
             IG  V+ H
Sbjct: 129 CMIGAGVFGH 138


>12_02_0287 - 16851369-16851998
          Length = 209

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 201 DAGGGDSCVGPQAPLTTVSPGWTIASGRKHSWLNRW 308
           DAGGGD   G +      + G     GR+ + + RW
Sbjct: 161 DAGGGDGAAGRRTGKAVGAAGGVQRHGRERATVGRW 196


>12_02_0286 - 16845594-16846223
          Length = 209

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 201 DAGGGDSCVGPQAPLTTVSPGWTIASGRKHSWLNRW 308
           DAGGGD   G +      + G     GR+ + + RW
Sbjct: 161 DAGGGDGAAGRRTGKAVGAAGGVQRHGRERATVGRW 196


>04_04_0848 -
           28677545-28677635,28677760-28677887,28678020-28678126,
           28678242-28678320,28678426-28678515,28678603-28678854,
           28680351-28680497,28680711-28681035,28681177-28681406
          Length = 482

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 351 GISLLVFYAIGISVYRHQGLIFVNCNDTRPYSQVFYHQIVSAETYFPFSSYY 506
           G+S ++F  +   +    GL   N  + R   Q F+  +VS   YFP +S+Y
Sbjct: 182 GVSDMIFDLVAKKLI---GLDVTNSRELRKNFQDFFQGMVSFPIYFPGTSFY 230


>04_04_1578 + 34569091-34569966
          Length = 291

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 162 GLKQEENYPLLKVDAGGGDSCV 227
           G+ + E  P +  D+GGG+SCV
Sbjct: 143 GMPEHEASPEISPDSGGGESCV 164


>02_02_0691 + 12999452-12999820
          Length = 122

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 207 GGGDSCVGPQAPLTTVSP-GWTIASG 281
           GGG   VG +AP+    P GW +A G
Sbjct: 4   GGGGPAVGSEAPVVAPKPRGWRMAVG 29


>01_06_1087 -
           34430521-34430899,34432336-34432806,34432926-34433112,
           34433470-34433599,34433794-34434125,34434566-34435050,
           34435185-34435752,34436579-34436640,34437569-34437636
          Length = 893

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 405 GLIFVNCNDTRPYSQVFYHQI-VSAETYFPFSSYYGYLSNMVTQYPD 542
           G  F++  D RP     Y  + VS    +     YG +++++T+YP+
Sbjct: 190 GTPFISTLDLRPLQDTMYPFVNVSVAVSYFSRQRYGQVNDVITRYPE 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,574,570
Number of Sequences: 37544
Number of extensions: 414331
Number of successful extensions: 1009
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)