Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29m04
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical pr...    31   0.54 
AF016435-3|AAB65879.1|  438|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    27   8.9  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      27   8.9  
AC006617-11|AAF39766.2|  356|Caenorhabditis elegans Serpentine r...    27   8.9  

>Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical protein
            C13B4.1a protein.
          Length = 1010

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 177  ENYPLLKVDAGGGDSCVGPQAPLTTVSPGWTIASGRKHSWLNRWPE-LFSACWMTFILLG 353
            E+ P+        ++    Q+P T+      + + +K  W+NR+ E +     + FI +G
Sbjct: 939  EDIPMRPTSKTESETTWAIQSPPTSTDSNREVPAEKKRLWVNRFREFVVYGAVLIFIAVG 998

Query: 354  ISLLVFYAIGIS 389
              L VF+  G S
Sbjct: 999  TILSVFFGTGFS 1010


>AF016435-3|AAB65879.1|  438|Caenorhabditis elegans Hypothetical
           protein F59D6.4 protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 111 NKTLSAIFVFRMVDHDPGLKQEENYPLLKVD 203
           N  LS ++VFR  D+     Q +N PLLKVD
Sbjct: 49  NSMLSGLYVFRAGDNQECDFQIKNNPLLKVD 79


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
            protein C02F4.1 protein.
          Length = 1781

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 308  PPIKPRMFSPRSNGPSWRYRSKRRLRTHTRIASS 207
            PP  P   SP + GPS  Y    R+R H+  AS+
Sbjct: 1718 PPRPPNPISPINRGPSSNYEG-IRMRAHSHQAST 1750


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein
            C02F4.1 protein.
          Length = 1781

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 308  PPIKPRMFSPRSNGPSWRYRSKRRLRTHTRIASS 207
            PP  P   SP + GPS  Y    R+R H+  AS+
Sbjct: 1718 PPRPPNPISPINRGPSSNYEG-IRMRAHSHQAST 1750


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 308  PPIKPRMFSPRSNGPSWRYRSKRRLRTHTRIASS 207
            PP  P   SP + GPS  Y    R+R H+  AS+
Sbjct: 1718 PPRPPNPISPINRGPSSNYEG-IRMRAHSHQAST 1750


>AC006617-11|AAF39766.2|  356|Caenorhabditis elegans Serpentine
           receptor, class z protein56 protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 294 WLNRWPELFSACW--MTFILLGISLLVFYAIGISVYRHQGLIFVNCNDTRPYSQVFYHQI 467
           W N  PEL    W  + +ILL IS L++  I ISV +   L   +  + +P   +F+  +
Sbjct: 182 WYN--PELLFWSWHMLGYILLIISALLYLPIMISVRKLSHL--ASAQENKPQKYIFWQTM 237

Query: 468 V 470
           +
Sbjct: 238 I 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,985,372
Number of Sequences: 27780
Number of extensions: 354368
Number of successful extensions: 822
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)