Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29m03
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370... 31 1.0
12_01_0173 - 1292164-1293036,1294063-1294098,1294195-1294334,129... 29 3.2
11_01_0172 - 1383568-1384440,1385336-1385401,1385470-1385505,138... 29 3.2
03_02_0120 - 5728572-5728712,5728812-5728916,5729178-5729441,572... 29 3.2
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 29 4.2
03_05_0871 + 28396964-28399843 28 5.6
10_07_0077 + 12645091-12646750,12647612-12648273 28 7.4
08_01_0117 + 941334-941339,941720-941906,942444-942565,942648-94... 28 7.4
06_01_0288 - 2106113-2109055 27 9.7
01_05_0602 + 23577328-23579805 27 9.7
>05_03_0369 - 13136146-13136175,13136237-13136908,13136926-13137016,
13137184-13137416,13137459-13137731,13137877-13138265,
13138325-13139156,13139847-13139922,13140027-13140414,
13141395-13141748,13142069-13142333,13143366-13143716
Length = 1317
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 308 LPEEVTYRSVKLSEDREGTDEFTHNLRIWMKDKMSIAAVKEGTDQLVGLLIMRIQE 475
LP+ + ++ +KL E T T +WM S+ ++ EG L L+ + I +
Sbjct: 1206 LPKLILWKCLKLKSLPESTKHLTSLKSLWMVGCSSMTSLPEGLGHLASLMELNIND 1261
>12_01_0173 -
1292164-1293036,1294063-1294098,1294195-1294334,
1295592-1295748,1295862-1296035,1296146-1296396,
1299446-1299590
Length = 591
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +1
Query: 493 YIQPHKDNSQRALHISNEILQRS-REAGVYLRSARR--PEILQDLY 621
Y +KD L++SN+ILQ S R+ G ++ R P +L+D Y
Sbjct: 73 YNSANKDKKVSFLYLSNDILQNSKRKGGEFVNEFWRVLPGLLKDFY 118
>11_01_0172 -
1383568-1384440,1385336-1385401,1385470-1385505,
1385604-1385743,1386978-1387134,1387245-1387418,
1387540-1387790,1390296-1390446
Length = 615
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +1
Query: 493 YIQPHKDNSQRALHISNEILQRS-REAGVYLRSARR--PEILQDLY 621
Y +KD L++SN+ILQ S R+ G ++ R P +L+D Y
Sbjct: 75 YNSANKDKKVSFLYLSNDILQNSKRKGGEFVNEFWRVLPGLLKDFY 120
>03_02_0120 -
5728572-5728712,5728812-5728916,5729178-5729441,
5729809-5729958,5730070-5730150,5730481-5730597,
5730679-5730831,5731426-5731569,5731773-5731802,
5732070-5732430,5732682-5732849,5733371-5733600,
5734088-5734194,5734275-5734623
Length = 799
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 544 EILQRSREAGV-YLRSARRPEILQDLYSRFEESLQA 648
+I++R E G+ Y+ + R IL D Y ++EESLQA
Sbjct: 225 DIIRRLFERGLAYVGTDYRSNILWDEYIKYEESLQA 260
>05_03_0653 + 16617121-16617359,16618892-16618955,16619455-16619485,
16619577-16619848,16620528-16620633,16620715-16620872,
16621527-16621714,16621786-16621855,16622814-16622984,
16624363-16624838,16625625-16625871,16626158-16626490,
16627329-16627412,16627751-16627843,16627966-16628025,
16628582-16628680,16628830-16628970,16629207-16629287,
16629895-16629966,16631160-16631231,16632083-16632176,
16632257-16632339,16632455-16632532,16632914-16632970,
16633055-16633132,16633236-16633357,16633463-16633623,
16634419-16634495,16634570-16634683,16634857-16634958,
16635368-16635436,16635437-16635577,16635936-16636109,
16636934-16637063,16637137-16637276,16637369-16637446,
16637813-16637911,16638408-16638803
Length = 1749
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -2
Query: 213 GALILSSNIFIFSTSASAVFAIFVTLY 133
G L L FSTS SAV A+ +TLY
Sbjct: 1370 GFLFLGGGTHTFSTSNSAVAALLITLY 1396
>03_05_0871 + 28396964-28399843
Length = 959
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 489 ENAHFSCIRMMSNPTSWSVPSLTAAIDILSFIQILKL 379
E+ HFSCI+ ++ SW V S ++ L+ + LKL
Sbjct: 827 EDPHFSCIKSITLSGSWIVLSPMESLGSLTTLYELKL 863
>10_07_0077 + 12645091-12646750,12647612-12648273
Length = 773
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 300 NIICPKR*RTGQLNYP 347
NI CP++ R G LNYP
Sbjct: 659 NITCPRKFRPGDLNYP 674
>08_01_0117 +
941334-941339,941720-941906,942444-942565,942648-942656,
942965-943067,943204-943247,943487-943516,943615-943737,
943816-943841,943934-944015,944137-944178,944259-944292,
944424-944451,944779-945022,945023-945124,945318-945443,
945533-945715,945803-945961
Length = 549
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 527 LYTSVMKFYNEVEKPVCIYEALGVRRYFKIY 619
LY V+ F+ +V + +C+ L +R +FK++
Sbjct: 350 LYLLVLSFHLQVNRIMCLIVTLSLRAFFKMH 380
>06_01_0288 - 2106113-2109055
Length = 980
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/72 (29%), Positives = 30/72 (41%)
Frame = -2
Query: 474 SCIRMMSNPTSWSVPSLTAAIDILSFIQILKLCVNSSVPSLSSDNLTDLYVTSSGR*CFF 295
S + + S S SVP + LSF+Q+L + +P S L L + R
Sbjct: 258 SYLDLSSCQLSGSVPDNIGNLSSLSFLQLLDNHLEGEIPQHMS-RLCSLNIIDMSRNNLS 316
Query: 294 RSFTASSYLLSC 259
+ TA L SC
Sbjct: 317 GNITAEKNLFSC 328
>01_05_0602 + 23577328-23579805
Length = 825
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 626 RLYKS*SISGRRALRKYTPASLLRCKISLLMCRARCELSLC 504
R++K G A KYT +LRC SL+ R C++ C
Sbjct: 450 RIFKELICEGVLA-NKYTYVGILRCCTSLMDLRFGCQVHAC 489
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,259,855
Number of Sequences: 37544
Number of extensions: 397069
Number of successful extensions: 943
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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