Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29m03
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.63 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.63 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.83 

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
 Frame = -1

Query: 637 ILQSDYINLEVSPDAERFVNTHRLLY--FVVKFHY*CVELVVSYLYAAECTRKCT----F 476
           +L+ D++     PD+  F N   + +    +  HY  +    + LY  + T K +    F
Sbjct: 109 LLEVDWLKNMWRPDSF-FKNAKSVTFQTMTIPNHYLWLYKDKTILYMVKLTLKLSCAMNF 167

Query: 475 LLYPHDE*SDELVRSLLDGGYRHLILHPDPQI 380
           L+YPHD    +L    L      +I   DP +
Sbjct: 168 LIYPHDTQECKLQMESLSHTTDEMIFQWDPDV 199


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 231 TRPQIDGALILSSNIFIFSTSASAVFAIFVTLYWQGA 121
           T+  +D AL    N  +  T ASA F I  T  WQ A
Sbjct: 412 TQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRA 448



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 456 SNPTSWSVPSLTAAIDI--LSFIQILKLCVNSSVP 358
           SNPT WS  ++T A++   L  + I +  ++ ++P
Sbjct: 567 SNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLP 601


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 281 AVKLLKKHYLPEEVTYRSVKLSEDREGTDEFTH 379
           A  LL+K++LP   +Y+S  L+ ++E  D  +H
Sbjct: 430 AENLLEKNWLPVHTSYKS-GLNLEQEKKDSISH 461


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,527
Number of Sequences: 438
Number of extensions: 3967
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)