Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29l24
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    93   4e-20
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    78   1e-15
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    66   3e-12
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    28   1.4  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    26   5.6  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   9.9  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 92.7 bits (220), Expect = 4e-20
 Identities = 42/86 (48%), Positives = 57/86 (66%)
 Frame = +2

Query: 413 RKGDLLHMHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGWDQGLLGMCEGEQRKLVI 592
           + GD + MHYTGTL +G +FDSS+ RG+P    +G GQ+I+GWD+G+  M  GE+ KL I
Sbjct: 18  KPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTI 77

Query: 593 PPELAYGSAGAPPKILKSATLTFHVE 670
            P+  YG  G P  I  ++TL F VE
Sbjct: 78  TPDYGYGPRGFPGLIPPNSTLLFDVE 103


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 38/84 (45%), Positives = 53/84 (63%)
 Frame = +2

Query: 419 GDLLHMHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGWDQGLLGMCEGEQRKLVIPP 598
           G  + M Y G L++G  FD +  +G P  F LG G+VI+GWD G+ GM EG +RK+ IP 
Sbjct: 275 GKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPA 333

Query: 599 ELAYGSAGAPPKILKSATLTFHVE 670
            +AYG+    P I K++TL F V+
Sbjct: 334 PMAYGNQSI-PGIPKNSTLVFEVK 356


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 66.5 bits (155), Expect = 3e-12
 Identities = 36/79 (45%), Positives = 47/79 (59%)
 Frame = +2

Query: 434 MHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGWDQGLLGMCEGEQRKLVIPPELAYG 613
           M Y G L +G  FD +I  G P TF LG  +VIKGWD G++GM  G +R + IP  +AYG
Sbjct: 281 MRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAYG 339

Query: 614 SAGAPPKILKSATLTFHVE 670
           S    P I  ++ L F V+
Sbjct: 340 SKRL-PGIPANSDLVFDVK 357


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 245 NTDFLT*LHSLFNCYKTLLNTKMRFKSTLNVP 150
           +TD +  L  + NCY  + N K + +ST N P
Sbjct: 582 DTDSIDVLEDIDNCYSKVFNKKSKRESTSNEP 613


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 468 NLIVQF-LEVTP*PSNLVLVKLLRVGIKGYLECAKENNVNLS 590
           NL+ Q+ +E+    S LVL K LR+ ++  LE  K   ++ S
Sbjct: 21  NLLEQYEVEIARLKSQLVLEKKLRIQVEKELESVKTKQISSS 62


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
 Frame = +3

Query: 396 TVPSRAAKEIFCICTTLAL*MTVQNLIVQFLEVTP*PSNLVLVKLLRVG----IKGYLEC 563
           T  +  A+  F I   +AL +    ++ +  E  P      +V+ L V       GYL  
Sbjct: 718 TTLTMCAEGEFLISLVMALRLNEYKVVQKVYESIPITDVEHVVQELPVSYLANFMGYLSS 777

Query: 564 AKENNVNLSFHRNWLMVQLEHHQRY 638
                 ++ FH  W+   L +H  Y
Sbjct: 778 FAAETPHIEFHLRWMKSVLTYHGEY 802


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,895
Number of Sequences: 5004
Number of extensions: 40695
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)