Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29l20
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0507 + 14814761-14815272,14816215-14816346,14817391-14817403     31   0.59 
02_02_0178 + 7490447-7490659,7490996-7491112,7491337-7491517,749...    29   1.4  
12_02_0828 - 23502276-23503472,23503568-23504002,23504097-235042...    29   1.8  
12_02_0208 + 15549411-15549740                                         27   5.5  
08_01_0815 - 7914634-7914740,7915262-7915357,7922268-7922328,792...    27   5.5  
10_08_0735 - 20200229-20200693,20200813-20201823,20202172-202022...    27   9.6  

>05_03_0507 + 14814761-14815272,14816215-14816346,14817391-14817403
          Length = 218

 Score = 30.7 bits (66), Expect = 0.59
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
 Frame = +3

Query: 222 RTLSSSSRSP----EPGQGGSGSKTKLVTVT 302
           R +SSSSRSP    +P QGG+GS+ + +T +
Sbjct: 135 RRVSSSSRSPPSPVQPRQGGAGSRRRYITTS 165


>02_02_0178 +
           7490447-7490659,7490996-7491112,7491337-7491517,
           7491594-7491679,7491785-7491889,7492059-7492121,
           7492404-7492513,7492644-7492763,7492833-7492908,
           7493254-7493327,7493474-7493594,7495559-7495656,
           7495735-7495858,7496373-7496504
          Length = 539

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 148 RRFSDEVFKIFSKRPLVSVRILFVLK*FCPDFINLDKLYPSL 23
           R+ ++EVF I  + PL+ V +         D+    KLYP++
Sbjct: 405 RKLAEEVFSIVGRDPLIEVAVALEKAALSDDYFVKRKLYPNV 446


>12_02_0828 -
           23502276-23503472,23503568-23504002,23504097-23504213,
           23505330-23505396,23505685-23505725,23506161-23506237,
           23506699-23506945
          Length = 726

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
 Frame = -1

Query: 394 ESYNGLVSHIYNKSF--ILKTVLLVKLSQKLHSVTVTN 287
           E YN L+S +Y+K++    +  +L +LS+KLH +T+T+
Sbjct: 204 EFYNDLLS-VYDKNYDPSAELAILGRLSEKLHLMTITD 240


>12_02_0208 + 15549411-15549740
          Length = 109

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 150 NYVTQGKIEYLVLRAIAVATKCHY 221
           N +T  ++E L+L  IA++T CHY
Sbjct: 33  NLITLFQLEVLLLMFIAMSTLCHY 56


>08_01_0815 -
           7914634-7914740,7915262-7915357,7922268-7922328,
           7922365-7923621
          Length = 506

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 150 NYVTQGKIEYLVLRAIAVATKCHY 221
           N +T  ++E L+L  IA++T CHY
Sbjct: 33  NLITLFQLEVLLLMFIAMSTLCHY 56


>10_08_0735 -
           20200229-20200693,20200813-20201823,20202172-20202272,
           20203424-20203562
          Length = 571

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = -3

Query: 227 CTVVAFRGYCYRPQYQVFYLSLCNIIQE---VFRRGF*NLQQTAFGFCTNIICVKI 69
           C     +G C     +  Y SL +I  E   +F     +L+    GFC  I C+KI
Sbjct: 220 CAFHPDQGACSFRNLKRVYFSLVHITTEELWIFLYNSLSLEHLELGFCHKIACLKI 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,793,273
Number of Sequences: 37544
Number of extensions: 192631
Number of successful extensions: 455
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)