Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29l20
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr...    30   0.93 
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr...    30   0.93 
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr...    30   0.93 
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr...    30   0.93 
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr...    30   0.93 
AF039049-9|AAB94248.1|  494|Caenorhabditis elegans Cytochrome p4...    28   3.8  
U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms prot...    27   5.0  
AF519108-1|AAM74222.1|  909|Caenorhabditis elegans EOR-1 protein.      27   5.0  
AF502568-1|AAM74151.1|  909|Caenorhabditis elegans EOR-1 protein.      27   5.0  
AF100669-8|AAK39268.1|  909|Caenorhabditis elegans Egl-1 suppres...    27   5.0  
AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.      27   5.0  
U64858-9|AAB18288.2|  398|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    27   8.7  
U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U40411-4|AAC47065.1|  440|Caenorhabditis elegans Temporarily ass...    27   8.7  
U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical protein
            F15G9.4b protein.
          Length = 5198

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +3

Query: 15   RCQSEGYNLS--RFIKSGQNYFNTNNIRTETKGRLLKILKTSSEN 143
            RC   G+     +++K+G+   +  NIR   +G++L+IL+T S++
Sbjct: 3788 RCAVTGHPFPSIKWLKNGKEVTDDENIRIVEQGQVLQILRTDSDH 3832


>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical protein
            F15G9.4a protein.
          Length = 5175

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +3

Query: 15   RCQSEGYNLS--RFIKSGQNYFNTNNIRTETKGRLLKILKTSSEN 143
            RC   G+     +++K+G+   +  NIR   +G++L+IL+T S++
Sbjct: 3788 RCAVTGHPFPSIKWLKNGKEVTDDENIRIVEQGQVLQILRTDSDH 3832


>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical protein
            F15G9.4b protein.
          Length = 5198

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +3

Query: 15   RCQSEGYNLS--RFIKSGQNYFNTNNIRTETKGRLLKILKTSSEN 143
            RC   G+     +++K+G+   +  NIR   +G++L+IL+T S++
Sbjct: 3788 RCAVTGHPFPSIKWLKNGKEVTDDENIRIVEQGQVLQILRTDSDH 3832


>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical protein
            F15G9.4a protein.
          Length = 5175

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +3

Query: 15   RCQSEGYNLS--RFIKSGQNYFNTNNIRTETKGRLLKILKTSSEN 143
            RC   G+     +++K+G+   +  NIR   +G++L+IL+T S++
Sbjct: 3788 RCAVTGHPFPSIKWLKNGKEVTDDENIRIVEQGQVLQILRTDSDH 3832


>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
            precursor protein.
          Length = 5198

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +3

Query: 15   RCQSEGYNLS--RFIKSGQNYFNTNNIRTETKGRLLKILKTSSEN 143
            RC   G+     +++K+G+   +  NIR   +G++L+IL+T S++
Sbjct: 3788 RCAVTGHPFPSIKWLKNGKEVTDDENIRIVEQGQVLQILRTDSDH 3832


>AF039049-9|AAB94248.1|  494|Caenorhabditis elegans Cytochrome p450
           family protein 35A5 protein.
          Length = 494

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 51  IKSGQNYFNTNNIRTETKGRLLKILKTSSENLLN 152
           IKSG+   + NN++  T   LLKI+K   E   N
Sbjct: 258 IKSGKYVIDENNLQDYTDAFLLKIVKGEDEKNFN 291


>U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms protein
           1 protein.
          Length = 442

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 129 TSSENLLNYVTQGKIEYLVLRAIAVATKCHYRTLSSSSRSPE 254
           T SEN L ++ Q  +       +A+ + CH+     SS+  E
Sbjct: 193 TGSENELGFIIQSLLAIFNAITLAIISSCHFEFFEPSSQFME 234


>AF519108-1|AAM74222.1|  909|Caenorhabditis elegans EOR-1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 3   CVNNRCQSEGYNLSRFIKSGQNYFNTN 83
           C++ R  ++ YNL   +KS  +YF++N
Sbjct: 142 CLSIRTLAQRYNLPGLVKSATDYFDSN 168


>AF502568-1|AAM74151.1|  909|Caenorhabditis elegans EOR-1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 3   CVNNRCQSEGYNLSRFIKSGQNYFNTN 83
           C++ R  ++ YNL   +KS  +YF++N
Sbjct: 142 CLSIRTLAQRYNLPGLVKSATDYFDSN 168


>AF100669-8|AAK39268.1|  909|Caenorhabditis elegans Egl-1
           suppressor/dio uptake defective/raf enhancer protein 1
           protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 3   CVNNRCQSEGYNLSRFIKSGQNYFNTN 83
           C++ R  ++ YNL   +KS  +YF++N
Sbjct: 142 CLSIRTLAQRYNLPGLVKSATDYFDSN 168


>AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.
          Length = 442

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 129 TSSENLLNYVTQGKIEYLVLRAIAVATKCHYRTLSSSSRSPE 254
           T SEN L ++ Q  +       +A+ + CH+     SS+  E
Sbjct: 193 TGSENELGFIIQSLLAIFNAITLAIISSCHFEFFEPSSQFME 234


>U64858-9|AAB18288.2|  398|Caenorhabditis elegans Hypothetical
           protein C16D9.1 protein.
          Length = 398

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 386 VAFKFLHNFNIVNVPNTGSYGRK 454
           +A K + N+N+VN P T  YGR+
Sbjct: 290 IAPKVIDNYNVVNTPKT-EYGRR 311


>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +3

Query: 3    CVNNRCQSEGYNLSRFIKS--GQNYFNTN-NIRTETKGRLLKILKTSSENLLNYVTQGKI 173
            C    CQ++G  L     S  G  YF  + +   ET+  L   LKT++ N +   ++GK 
Sbjct: 3722 CSVPSCQNDGKCLEEAELSVGGDGYFEISLSNEIETRMELEIELKTTTHNGIIMWSRGKR 3781

Query: 174  EYLVLRAIAVATKCHY 221
            ++ +LR +    + H+
Sbjct: 3782 DFHMLRLVNGTPEYHW 3797


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +3

Query: 3    CVNNRCQSEGYNLSRFIKS--GQNYFNTN-NIRTETKGRLLKILKTSSENLLNYVTQGKI 173
            C    CQ++G  L     S  G  YF  + +   ET+  L   LKT++ N +   ++GK 
Sbjct: 3722 CSVPSCQNDGKCLEEAELSVGGDGYFEISLSNEIETRMELEIELKTTTHNGIIMWSRGKR 3781

Query: 174  EYLVLRAIAVATKCHY 221
            ++ +LR +    + H+
Sbjct: 3782 DFHMLRLVNGTPEYHW 3797


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +3

Query: 3    CVNNRCQSEGYNLSRFIKS--GQNYFNTN-NIRTETKGRLLKILKTSSENLLNYVTQGKI 173
            C    CQ++G  L     S  G  YF  + +   ET+  L   LKT++ N +   ++GK 
Sbjct: 3722 CSVPSCQNDGKCLEEAELSVGGDGYFEISLSNEIETRMELEIELKTTTHNGIIMWSRGKR 3781

Query: 174  EYLVLRAIAVATKCHY 221
            ++ +LR +    + H+
Sbjct: 3782 DFHMLRLVNGTPEYHW 3797


>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 3   CVNNRCQSEGYNLSRFIKSGQNYFNT 80
           CVNN CQS G N      SG + +NT
Sbjct: 178 CVNNMCQSTGSN--SMYGSGSSGYNT 201


>U40411-4|AAC47065.1|  440|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 320 protein.
          Length = 440

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 231 SSSSRSPEPGQGGSGSKTKLVTVTECNF*D 320
           SS S S    +GG GS  ++V +T+ NF D
Sbjct: 147 SSGSGSGSGKRGGGGSGNEVVELTDANFED 176


>U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical
           protein C56E6.5 protein.
          Length = 595

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 276 SKTKLVTVTECNF*DNLTSNTVFKIKDLL*IC 371
           SKT L++  ECN     TS T+F I  L+  C
Sbjct: 393 SKTSLLSFRECNLYCQTTSLTIFSIFFLVYSC 424


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,730,635
Number of Sequences: 27780
Number of extensions: 178376
Number of successful extensions: 363
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)