Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29l20
         (460 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.39 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.39 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.7  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   4.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   6.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.5  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.39
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 391 SYNGLVSHIYNKSFILKTVLLVKLSQ 314
           +YN LV  + N S +L+  + +KLSQ
Sbjct: 39  NYNKLVRPVVNTSDVLRVCIKLKLSQ 64


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.39
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 391 SYNGLVSHIYNKSFILKTVLLVKLSQ 314
           +YN LV  + N S +L+  + +KLSQ
Sbjct: 39  NYNKLVRPVVNTSDVLRVCIKLKLSQ 64


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 9   NNRCQSEGYNLSRFIKSGQNYFNTN 83
           NN   S  YN +    +  N +NTN
Sbjct: 84  NNNSLSNNYNYNNNYNNYNNNYNTN 108


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 231  SSSSRSPEPGQGGSGSKTK 287
            S  +  P+P  GG G++ K
Sbjct: 1018 SQEANKPKPATGGKGTRPK 1036


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 391 SYNGLVSHIYNKS 353
           S+NG++SHI  K+
Sbjct: 301 SFNGMLSHILQKT 313


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
          RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 3  CVNNRCQSEGYNLSRFIKSGQNYFNTNNI 89
          C+   CQ+    + R   SG+N  NT N+
Sbjct: 10 CLGIACQNIRGGVVRENSSGKNLTNTLNV 38


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 391 SYNGLVSHIYNKSFILKTVLLVKLSQ 314
           +YN L+  + N +  L   L +KLSQ
Sbjct: 44  NYNRLIRPVMNNTETLTVQLGLKLSQ 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,520
Number of Sequences: 438
Number of extensions: 2528
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)