Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29l16
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase family|Sc...    28   1.1  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   5.8  
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    25   7.7  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   7.7  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   7.7  

>SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 518 EHKTRATISEYLLIRTFIESDIQNVCKLIYFFHDTFLPNNRH 643
           EH++R  + E   +  F +  ++N+C  I    D FL   RH
Sbjct: 88  EHQSRGDLKESYDLAGFPDPKLENLCPFIAEHMDEFLQFQRH 129


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +2

Query: 497 KVLEELSEHKTRATISEYLLIRTFIESDIQNVCKLIYFFHDTFLPNNRHNLTANSIWKTI 676
           ++LE L    +  +   + L+  FI++ +  + +    F +  L +N H +    +WKTI
Sbjct: 565 EILEYLQSQSSTVSNQVFTLLSNFIQNPLFVLDECFDEFRNLILMHNSHTV-HTVVWKTI 623


>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +1

Query: 337 NLMKHSIITF-ILFYERASELSANFRTIL*FRCTFTDQRSVYLINILS 477
           NL+ +++ T  + ++ER  + S+N R++L     FTD     L+N++S
Sbjct: 310 NLIPNALNTASVQWFERTLDDSSNRRSLLPEAFLFTDSVLKILLNVIS 357


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = +3

Query: 183 LRKINNRNVQDVKTVTRLHLYSINLPRNITLDALVLKHYSKLNEKSDNTT 332
           L  I  RN+ +     +  L + ++P N++ ++L++K Y+  N+ S + T
Sbjct: 662 LNSIYARNLFNTVEQLQSVLPNCHVPSNLSTESLLIKFYTNQNKISADVT 711


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 298 ILNLMKSQIIQHKNLMKHSIITFILFYERASELSANF 408
           I +L+   +I H N+ + S  + + F  R S L+ NF
Sbjct: 131 IASLLHDDVIDHANVRRGSPSSNVAFGNRRSILAGNF 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,939
Number of Sequences: 5004
Number of extensions: 51469
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)