Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29l16
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045640-2|AAM81123.1|  185|Caenorhabditis elegans Hypothetical ...    30   1.8  
AF022978-2|AAG24183.1|  440|Caenorhabditis elegans Nuclear hormo...    29   2.3  
Z99171-4|CAB16313.1|  722|Caenorhabditis elegans Hypothetical pr...    29   3.1  

>AF045640-2|AAM81123.1|  185|Caenorhabditis elegans Hypothetical
           protein C11D2.7 protein.
          Length = 185

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 171 HIGVLRKINNRNVQDVKTVTRLHLYSINLP 260
           H+GV+R +  RN   + T+  LH Y   LP
Sbjct: 65  HLGVVRFVKTRNTDYIPTLRTLHKYPFILP 94


>AF022978-2|AAG24183.1|  440|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 130 protein.
          Length = 440

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 563 TFIESDIQNVCKLIYFFHD-TFLPNNRHNLTANSIW 667
           TF E+D   V K + +F D   LP+N+  L   S+W
Sbjct: 226 TFWETDFLTVAKWLTYFDDFQLLPHNQQILLLKSVW 261


>Z99171-4|CAB16313.1|  722|Caenorhabditis elegans Hypothetical
           protein F47G4.4 protein.
          Length = 722

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 174 IGVLRKINNRNVQDVKTVTRLHLYSINLPRNITLD-ALVLKHYSKLNEKSD 323
           IG++ K  NRN++ +K +T     ++++P  +  D  LVL     L+ ++D
Sbjct: 566 IGIVAKKENRNIRRLKMLTSRRTSNVDIPPEVCSDEQLVLTATRILSRRND 616


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,946,107
Number of Sequences: 27780
Number of extensions: 271233
Number of successful extensions: 424
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)