Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29l11
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 48 1e-06
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 28 1.0
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 27 2.4
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 27 3.1
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 27 3.1
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 4.2
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 26 4.2
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 26 5.5
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 25 7.3
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 25 9.6
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 969
Score = 48.0 bits (109), Expect = 1e-06
Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 2/149 (1%)
Frame = +2
Query: 194 YMQVLVQGNLAWYDAINISQNVFSNMQWESLSESEIPQLQVHELPLGERKL--RVMSLNE 367
+++ LV GN DA N+ ++ + + + S++ + + +P G + V+ E
Sbjct: 686 FLESLVHGNYTEEDAKNLIESAQKLIDPKPVFASQLSRKRAIIVPEGGNYIYKTVVPNKE 745
Query: 368 ASTNSIITNYYQAEVTTPSDLAXXXXXXXXXXXXXFDMLRTKEQLGYSVFSMMRYTFGVL 547
++I+ N +++ A F +LRTKEQLGY VF+++R +
Sbjct: 746 EKNSAIMYNLQISQLDDERSGALTRLARQIMKEPTFSILRTKEQLGYIVFTLVRQVTPFI 805
Query: 548 GFSVSVNTQVDKFSVSYVDGRVEAFLRKF 634
++ V ++ S +Y++ R+ A L +F
Sbjct: 806 NLNIFVQSE---RSSTYLESRIRALLDQF 831
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 221 LAWYDAINISQNVFSNMQWESLSESEIPQLQVHELPLGERKL 346
+A + AIN+ + S+++W S+ +P + EL + E K+
Sbjct: 94 IAIFAAINLLLSSLSSLKWISIGSILLPYFKKKELSISEHKI 135
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 296 EIPQLQVHELPLGERKLRVMSLNEASTNSIITNYYQAEVT 415
EI L E+PL ++ R+ S N +++ S ++ AEV+
Sbjct: 190 EIKPLTTREIPLARKRSRLNSFNSSTSTSGSSSNVAAEVS 229
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 310 QLRDFALRQTLPLHVAKNI-LRYINRIIPSQVSLN 209
+LRD LRQT L + K I L+ R+ P Q+S N
Sbjct: 590 ELRDSILRQTKLLLLVKEIMLQEAQRLKPEQMSTN 624
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 239 INISQNVFSNMQWESLSESEIP-QLQVHEL--PLGERKLRVMSLNEASTNSI 385
+N + N+F N+ E L + ++P + +V +L P+ RK + NE T S+
Sbjct: 83 LNSAHNIFLNLFKEKLEDRQVPNEAEVEKLFAPIFNRKSAQLE-NETDTKSL 133
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 314 VHELPLGERKLRVMSLNEASTNSIITNYYQAE 409
+H GER++RV++++ +TNS+ Y A+
Sbjct: 634 LHTTCNGERRIRVLTISLPTTNSMTDLYASAD 665
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +2
Query: 503 GYSVFSMMRYTFGVLGF 553
G+S+FS++R++F LGF
Sbjct: 122 GFSIFSILRWSFQKLGF 138
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = -3
Query: 229 PSQVSLNQNLHIQFTEQSIMKVSQIVQSYVVDNKGFVSRRYV 104
P Q + Q++ + M + + Q Y ++G+++ RYV
Sbjct: 318 PKQTGIAQHIFTKLYNNDYMAIDTMTQLYCEVHQGYLADRYV 359
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 7.3
Identities = 8/43 (18%), Positives = 23/43 (53%)
Frame = -3
Query: 280 LPLHVAKNILRYINRIIPSQVSLNQNLHIQFTEQSIMKVSQIV 152
L LH ++ + +R++ + ++QN ++F +Q + ++
Sbjct: 220 LALHALNHVFKTRDRVLKNSARISQNPELEFRDQGYTRPKVLI 262
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 346 EGDESERSFNEQHH 387
EG+ E SFN QHH
Sbjct: 160 EGESDEGSFNTQHH 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,584
Number of Sequences: 5004
Number of extensions: 39903
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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