Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29l11
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0924 + 12429764-12430120,12430562-12430637,12430803-124308... 85 4e-17
01_06_0917 + 32978306-32978434,32978570-32978645,32979324-329793... 46 2e-05
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225... 40 0.001
01_06_0916 + 32950575-32950656,32952061-32952272,32952408-329524... 37 0.012
07_03_0959 - 22885750-22886001,22886073-22886195,22886343-228864... 35 0.050
09_06_0080 + 20736778-20737005,20737104-20737482,20737572-207376... 31 0.81
03_02_0556 + 9448878-9449264 29 3.3
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 29 3.3
02_01_0462 + 3332464-3332470,3333606-3335806 29 3.3
01_06_1728 + 39480252-39480450,39480552-39481224,39481554-394816... 28 5.7
07_03_1692 - 28733184-28733980,28734306-28734373,28734481-287345... 27 9.9
01_01_0965 - 7589659-7589785,7590188-7590317,7590339-7590438,759... 27 9.9
>03_02_0924 + 12429764-12430120,12430562-12430637,12430803-12430849,
12431850-12431962,12432056-12432129,12432258-12432353,
12432440-12432559,12432660-12432893,12433486-12433634,
12434145-12434301,12434387-12434542,12435359-12435735,
12435871-12436020,12437071-12437253,12437440-12437643,
12437869-12437975,12438253-12438406,12438796-12438917,
12439541-12439787
Length = 1040
Score = 85.4 bits (202), Expect = 4e-17
Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 5/213 (2%)
Frame = +2
Query: 2 FEAVREVRARSYHNVLLKPNRLAKDLRMQVLLEPYISPRDKAFVIHNITXXXXXXXXXXX 181
FE ++E R+Y N +KP + LR+QVL E + +K V+ +T
Sbjct: 701 FEVIKEDLERAYKNTNMKPMSHSTYLRLQVLREIFWDVDEKLEVLMKLTFSDLVAYVPKL 760
Query: 182 XSKLYMQVLVQGNLAWYDAINISQNVFSNMQWESLSESEIPQLQVHELPLGERKLR-VMS 358
S+L+++ L GNL+ +A+NIS+ + + ++L + + +V +P +R V
Sbjct: 761 LSQLHIEGLCHGNLSEDEAMNISKIFQNTLSAQTLPDEARHEERVLCIPDDTNFVRSVRV 820
Query: 359 LNEASTNSIITNYYQAEVTTPSDL----AXXXXXXXXXXXXXFDMLRTKEQLGYSVFSMM 526
NE NS++ Y+ E D A FD LRTKEQLGY+V S
Sbjct: 821 KNELEENSVVEVYFPVEQDIGKDATKLRAITDLFSNIIEEPCFDQLRTKEQLGYTVDSSP 880
Query: 527 RYTFGVLGFSVSVNTQVDKFSVSYVDGRVEAFL 625
R T+ VL + V + K+S Y+ R+++F+
Sbjct: 881 RMTYRVLAYCFRVMS--SKYSPVYLQSRIDSFI 911
>01_06_0917 + 32978306-32978434,32978570-32978645,32979324-32979391,
32979868-32979959,32980121-32980194,32980372-32980415,
32980752-32980803,32981200-32981319,32981391-32981503,
32981674-32981761,32982144-32982229,32982832-32982918,
32983149-32983252,32983607-32983709,32983861-32983956,
32984067-32984256,32984352-32984413,32984560-32984664,
32985163-32985364,32985473-32985681,32986413-32986537,
32986644-32986695,32986772-32986858,32987125-32987247,
32987375-32987629
Length = 913
Score = 46.4 bits (105), Expect = 2e-05
Identities = 49/226 (21%), Positives = 88/226 (38%), Gaps = 8/226 (3%)
Frame = +2
Query: 2 FEAVREVRARSYHNVLLKPNRLAKDLRMQVLLEPYISPR-DKAFVIHNITXXXXXXXXXX 178
F A++E + Y N + ++LE P +K + +
Sbjct: 559 FCALKETAVKDYQNFKFSQPYYQASNYLSLILEDQNWPWVEKLEALSKLEPDSLAKFIPH 618
Query: 179 XXSKLYMQVLVQGNLAWYDAINISQNVFSNM--QWESLSESEIP-QLQVHELPLGERKLR 349
SK +++ +QGN+ DA +I Q + + +S+ +S P Q + + E +L+
Sbjct: 619 LLSKTFLECYIQGNIEPNDATSIVQEIEDTIFNTPKSVFKSMSPSQYLIRRVITLENELK 678
Query: 350 ----VMSLNEASTNSIITNYYQAEVTTPSDLAXXXXXXXXXXXXXFDMLRTKEQLGYSVF 517
+ LN+ + NS + + Q + + LRT EQLGY
Sbjct: 679 CYHQIEGLNQKNENSSVVQHIQVHLDDALSNIKLQLFALIARQPAANQLRTIEQLGYIAD 738
Query: 518 SMMRYTFGVLGFSVSVNTQVDKFSVSYVDGRVEAFLRKFYRDMKRL 655
+R GV + + + V SY+D RV+ F + F + L
Sbjct: 739 LYVRSDRGVRALEIVIQSTVK--DPSYLDARVDEFFKMFENKIHEL 782
>07_03_0961 - 22921761-22921850,22922204-22922338,22922409-22922531,
22922621-22922707,22922780-22922831,22922939-22923063,
22923724-22923932,22924206-22924407,22924526-22924630,
22925353-22925414,22925755-22925944,22926017-22926112,
22926203-22926305,22927019-22927122,22927264-22927395,
22928257-22928343,22929121-22929206,22929291-22929383,
22932197-22932284,22932402-22932514,22932621-22932743,
22934153-22934204,22934365-22934408,22934498-22934571,
22934655-22934746,22935594-22935661,22937146-22937221,
22937323-22937679
Length = 1055
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/94 (28%), Positives = 39/94 (41%)
Frame = +2
Query: 353 MSLNEASTNSIITNYYQAEVTTPSDLAXXXXXXXXXXXXXFDMLRTKEQLGYSVFSMMRY 532
+ LN+ NS + +Y Q F LR+ EQLGY + R
Sbjct: 836 LCLNQQDENSSLLHYIQIHQDDLKQNVLLQLLALVAKQPAFHQLRSVEQLGYITWLKQRN 895
Query: 533 TFGVLGFSVSVNTQVDKFSVSYVDGRVEAFLRKF 634
GV G ++ + V + +D RVEAFL+ F
Sbjct: 896 DSGVRGLQFTIQSTVK--DPANLDARVEAFLKMF 927
>01_06_0916 + 32950575-32950656,32952061-32952272,32952408-32952448,
32952916-32952959,32953259-32953561,32954145-32954302,
32954849-32954965,32955562-32955747,32955872-32956031,
32956079-32956151,32958613-32958889,32959024-32959099,
32960653-32960720,32961270-32961361,32961505-32961578,
32961777-32961820,32962155-32962206,32962585-32962704,
32962777-32962889,32963023-32963110,32963492-32963577,
32964172-32964258,32964491-32964594,32964996-32965098,
32965250-32965345,32965456-32965645,32965777-32965838,
32966014-32966118,32966782-32966983,32967092-32967300,
32968510-32968673,32968799-32968850,32968935-32969021,
32969319-32969441,32969567-32969605,32969606-32969860
Length = 1447
Score = 37.1 bits (82), Expect = 0.012
Identities = 50/232 (21%), Positives = 89/232 (38%), Gaps = 21/232 (9%)
Frame = +2
Query: 2 FEAVREVRARSYHNVLLKPNRLAKDLRMQVLLEPYISP-RDKAFVIHNITXXXXXXXXXX 178
F A++E + Y N + ++LE P +K + +
Sbjct: 1067 FCALKETAVKDYQNFKFSQPYSQASYYLSLILEDQKWPLAEKLEALSKLEPDSLAKFMPH 1126
Query: 179 XXSKLYMQVLVQGNLAWYDAINISQNVFSNM--QWESLSESEIP-QLQVHELPLGERKLR 349
SK +++ + GN+ +A +I Q + + S+ +S P Q + + + E +L+
Sbjct: 1127 LLSKTFLECYIHGNIEPNEATSIVQEIEDTIFNTPNSVFKSMSPSQYLIKRVIMLENELK 1186
Query: 350 ----VMSLNEASTNSIITNYYQAEVTTPS---------DLAXXXXXXXXXXXXX----FD 478
+ LN+ + NS + Y Q E + D A F+
Sbjct: 1187 CYHQIEGLNQKNENSSVVQYIQKEACEDAKHVYIQVHLDDALSNIKLQLFALIASQPAFN 1246
Query: 479 MLRTKEQLGYSVFSMMRYTFGVLGFSVSVNTQVDKFSVSYVDGRVEAFLRKF 634
LRT EQLGY +R GV V + + V S++D R++ F + F
Sbjct: 1247 QLRTVEQLGYIAGLSLRSDCGVWALEVVIQSTVK--DPSHLDARIDEFFKMF 1296
>07_03_0959 -
22885750-22886001,22886073-22886195,22886343-22886429,
22886504-22886555,22886701-22886825,22887002-22887213,
22887317-22887518,22887928-22888032,22889643-22889704,
22889998-22890187,22890260-22890355,22890442-22890544,
22891448-22891551,22893284-22893370,22894033-22894118,
22894397-22894489,22895615-22895777,22895899-22896011,
22896113-22896235,22897393-22897444,22897843-22897886,
22897975-22898048,22898133-22898224,22899374-22899441,
22900817-22900892,22900952-22901215
Length = 1015
Score = 35.1 bits (77), Expect = 0.050
Identities = 22/54 (40%), Positives = 26/54 (48%)
Frame = +2
Query: 473 FDMLRTKEQLGYSVFSMMRYTFGVLGFSVSVNTQVDKFSVSYVDGRVEAFLRKF 634
F LR+ EQLGY R GV G + + V S +D RVEAFL F
Sbjct: 827 FHQLRSVEQLGYITVLTQRNDSGVRGLQFIIQSTVK--DPSNLDDRVEAFLNMF 878
>09_06_0080 +
20736778-20737005,20737104-20737482,20737572-20737615,
20738491-20738612,20738701-20738809,20738933-20739046
Length = 331
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 352 DESERSFNEQHHHKLLPGRGDHALGFGRTRSPNDADG 462
DE+E + E+ H L +HA+G GR D +G
Sbjct: 107 DEAEEDYEEELEHHLRVHHHEHAVGEGRGEGERDGEG 143
>03_02_0556 + 9448878-9449264
Length = 128
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +1
Query: 391 KLLPGRGDHALGFGRTRSPNDADGGACVRHAAYEGAA-RLQRVQHDALH 534
KL+ G GD G RSP D D G R +Y L R H +H
Sbjct: 17 KLVIGCGDAERGGCEVRSPVDGDAGVMPRRVSYPTCCFVLSRSGHPGVH 65
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 373 NEQHHHKLLPGRGDHALGFGRTRSPN 450
+++HHH GRGDH G G R N
Sbjct: 344 SKKHHHDEEGGRGDHGHGGGGVRCKN 369
>02_01_0462 + 3332464-3332470,3333606-3335806
Length = 735
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 215 GNLAWYDAINISQNVFSNMQWESLSESEIPQLQV-HELPLGERKLRVMSLNEASTNSIIT 391
GNLA ++++SQN+F+ ++ + + L + H GE + +L + + +
Sbjct: 344 GNLAQLLSVDMSQNLFTGKIPLNICNASLLYLVISHNYLEGELPECLWNLKDLGYMDLSS 403
Query: 392 NYYQAEVTTPSD 427
N + EVTT S+
Sbjct: 404 NAFSGEVTTSSN 415
>01_06_1728 +
39480252-39480450,39480552-39481224,39481554-39481638,
39481731-39481820,39481953-39482026,39482421-39482505,
39482582-39482668,39482797-39482927,39483642-39483723,
39483810-39483857,39484793-39484912
Length = 557
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 394 LLPGRGDHALGFGRTRSPNDADGG 465
L P G A G T SP+DADGG
Sbjct: 16 LPPSEGGEASGAPSTSSPSDADGG 39
>07_03_1692 -
28733184-28733980,28734306-28734373,28734481-28734594,
28734835-28734884,28735012-28735422,28735534-28735610,
28736083-28736257,28736843-28736939,28737070-28737833,
28737900-28738001,28738093-28738174,28739004-28739161
Length = 964
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 122 CLEAICTAPTTLASGGLWRVG 60
C+ A C AP +GG WR G
Sbjct: 17 CMNAACGAPAPSPAGGEWRKG 37
>01_01_0965 -
7589659-7589785,7590188-7590317,7590339-7590438,
7590524-7590643,7590910-7591145,7591585-7591714
Length = 280
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 494 PSYAACRTQAPPSASLGLRVRPNPRA 417
PS AAC P L LR+ P PRA
Sbjct: 10 PSPAACLPSLPAGGRLRLRLAPPPRA 35
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,763,632
Number of Sequences: 37544
Number of extensions: 292733
Number of successful extensions: 981
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -